Non-Coding RNA Search

Ss1.1-Pig1-131C12.5

Sequence:


               
               GGATTTCCGGCAAAGTGGAGCACTTCGGCAAGTTTGGAGTCATCTATTATGATATCAACC
AGATCATCACCACTGCCGTGATGACCCTCAGCAAACACTTTGACACCCACGGGCGGATCA
AGGAAGTCCAGTATGAGATGTTCCGGTCCCTCATGTACTGGATGACGGTGCAGTATGACA
GCATGGGCAGGGTGATCAAGAGGGAGCTGAAACTGGGGCCCTATGCCAACACCACTAAGT
ACACCTATGACTATGATGGGGATGGGCAGCTCCAGAGTGTGGCCGTCAATGACCGCCCAA
CCTGGCGCTACAGCTACGACCTCAATGGGAACCTCCACTTGCTGAACCCAGGCAACAGTG
TGCGCCTCATGCCCCTGCGTTATGACCTCCGGGATCGGATAACCAGACTGGGCGACGTGC
AGTACAAAATTGACGATGATGGCTATCTGTGCCAGCGAGGTGCTGACATCTTTGAGTACA
ACTCCAAGGGCCTGCTAACGAGAGCCTACAACAAGGCCAGTGGGTGGAGTGTCCAGTACC
GCTATGATGGCGTGGGGCGGCGGGCTTCCTACAAGACCAACCTGGGCCACCATCTGCAGT
ATTTCTACTCCGACCTCCACAACCCAACTCGCATCACCCACGTCTACAATCACTCCAACT
CGGAAATAACCTCACTCTACTACGACCTTCAAGGTCACCTCTTTGCCATGGAGAGCAGTA
GTGGGGAGGAGTACTACGTTGCCTCGGATAACACAGGGACTCCCCTGGCCGTGTTCAGCA
TCAACGGTCTCATGATCAAACAGTTGCAGTACACCGCCTATGGGGAGATTTACTACGACT
CCAACCCTGACTTTCAGATGGTCATTGGCTTCCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGATTTCCGGCAAAGTGGAGCACTTCGGCAAGTTTGGAGTCATCTATTATGATATCAACC
AGATCATCACCACTGCCGTGATGACCCTCAGCAAACACTTTGACACCCACGGGCGGATCA
AGGAAGTCCAGTATGAGATGTTCCGGTCCCTCATGTACTGGATGACGGTGCAGTATGACA
GCATGGGCAGGGTGATCAAGAGGGAGCTGAAACTGGGGCCCTATGCCAACACCACTAAGT
ACACCTATGACTATGATGGGGATGGGCAGCTCCAGAGTGTGGCCGTCAATGACCGCCCAA
CCTGGCGCTACAGCTACGACCTCAATGGGAACCTCCACTTGCTGAACCCAGGCAACAGTG
TGCGCCTCATGCCCCTGCGTTATGACCTCCGGGATCGGATAACCAGACTGGGCGACGTGC
AGTACAAAATTGACGATGATGGCTATCTGTGCCAGCGAGGTGCTGACATCTTTGAGTACA
ACTCCAAGGGCCTGCTAACGAGAGCCTACAACAAGGCCAGTGGGTGGAGTGTCCAGTACC
GCTATGATGGCGTGGGGCGGCGGGCTTCCTACAAGACCAACCTGGGCCACCATCTGCAGT
ATTTCTACTCCGACCTCCACAACCCAACTCGCATCACCCACGTCTACAATCACTCCAACT
CGGAAATAACCTCACTCTACTACGACCTTCAAGGTCACCTCTTTGCCATGGAGAGCAGTA
GTGGGGAGGAGTACTACGTTGCCTCGGATAACACAGGGACTCCCCTGGCCGTGTTCAGCA
TCAACGGTCTCATGATCAAACAGTTGCAGTACACCGCCTATGGGGAGATTTACTACGACT
CCAACCCTGACTTTCAGATGGTCATTGGCTTCCATG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               82-201, - strand, RNAz p=0.526668
               

               
               642-761, - strand, RNAz p=0.509945

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.526668
               

               
               642-761, - strand, RNAz p=0.509945

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               643-706, - strand, RNAmicro p=0.969679

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               643-706, - strand, RNAmicro p=0.969679

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-874, gnl|bosTau2|chr27 (7092342-7093213)
               

               
               3-874, gnl|Hg17|chr4 (184089119-184089990)
               

               
               3-874, gnl|Mm7|chr8 (47010063-47009192)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-874, gnl|bosTau2|chr27 (7092342-7093213)
               

               
               3-874, gnl|Hg17|chr4 (184089119-184089990)
               

               
               3-874, gnl|Mm7|chr8 (47010063-47009192)

	82-201, - strand, RNAz p=0.526668
	642-761, - strand, RNAz p=0.509945

	3-874, gnl\|bosTau2\|chr27 (7092342-7093213)
	3-874, gnl\|Hg17\|chr4 (184089119-184089990)
	3-874, gnl\|Mm7\|chr8 (47010063-47009192)