Non-Coding RNA Search

Ss1.1-Pig1-131F11.5

Sequence:


               
               CCTAAGCTCCATTGTAGGCCGTGCGGCTGTGGCCCCTGTCACCTGGTCTGTCATCTCCCT
GCTGCGTGGTGAGGCCTATGTCTGTGCTCTCAGCGAGTTTGTGGACCCCTCCTCGCTCAC
AGCTGGAAAAGAGAGCTTCCCACTGGCCCACGCCACAGAAATCCTGGCCAGGTTCCCATG
CGGGGAGGGCCCTGCCAACCTGTCAGGCTTCCGGGAGGAGGTCAGCCGCAGGCTCAAGTA
CGAGTCCCAGCTCTTCGGGTGGCTGCTCATCGGCGTGGTGGCCATCCTGGTGTTCCTGAC
CAAGTGCCTCAAGCATTACTGCTCCCCACTCAGCTACCGCCAGGAGGCCTACTGGACACA
GTACCGCACCAACGAGGACCAGCTCTTCCAGCGCACGGCCGAGGTGCACTCGCGGGTGCT
GGCTGCCAACAATGTGCGCCGCTTCTTTGGCTTCGTGGCGCTCAACAAGGATGACGAGGA
GCTGGTTGCCAAGTTCCCAGTGGAAGGCACACAGCCGCGGCCACAGTGGAATGCCATCAC
TGGCGTCTACTTGTACCGTGAGAACCAGGGCCTCCCACTCTACAGCCGCCTGCACAAGTG
GGCCCAGGGTCTGGCGGGCAACGGCACGGCCCCGGACAACATAGAGATGGCCCTGCTCGC
CTCCTAAGGGTCCTGGTCCCATGCTCTTTGCCGATGACACGGCTTGGCCCCAGACTGAAC
CTCACTGCCTGCTCTCGGCAGGATCAGAGGGGACTTTTTTTTTAACTATAGCTTTTGGGG
GAAACTGGCCAGAAGAAAGGAACACAAAGTCAAAGTGGGGTGCAGATGTGAGAGCAAGCA
GACAGCGTGCGTTGGCTCTGGCGGCAAGGCTCTCGGACCTGAAGAAGTTTCCTCTCCTGT
TGCCTCCAGTCACTCAGTCAACAGCTTTGGAGAAAAGCCCCTTTCCCAGATCTGGTCCTT
AATCATGATGATGACTGGAGGTCCTTAACGATGTGGAGGACCTTTTATGGGCAGGACCCC
TTGGCTGGGGAGCCCTGGCAGCAGAGCCAGGTGATGATGACACTCACCAGCAGGCGCCCT
TCTATGAAACAGTGTGCAGCTCATTTGCACGTAACCGGACGCGTGGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAAGCTCCATTGTAGGCCGTGCGGCTGTGGCCCCTGTCACCTGGTCTGTCATCTCCCT
GCTGCGTGGTGAGGCCTATGTCTGTGCTCTCAGCGAGTTTGTGGACCCCTCCTCGCTCAC
AGCTGGAAAAGAGAGCTTCCCACTGGCCCACGCCACAGAAATCCTGGCCAGGTTCCCATG
CGGGGAGGGCCCTGCCAACCTGTCAGGCTTCCGGGAGGAGGTCAGCCGCAGGCTCAAGTA
CGAGTCCCAGCTCTTCGGGTGGCTGCTCATCGGCGTGGTGGCCATCCTGGTGTTCCTGAC
CAAGTGCCTCAAGCATTACTGCTCCCCACTCAGCTACCGCCAGGAGGCCTACTGGACACA
GTACCGCACCAACGAGGACCAGCTCTTCCAGCGCACGGCCGAGGTGCACTCGCGGGTGCT
GGCTGCCAACAATGTGCGCCGCTTCTTTGGCTTCGTGGCGCTCAACAAGGATGACGAGGA
GCTGGTTGCCAAGTTCCCAGTGGAAGGCACACAGCCGCGGCCACAGTGGAATGCCATCAC
TGGCGTCTACTTGTACCGTGAGAACCAGGGCCTCCCACTCTACAGCCGCCTGCACAAGTG
GGCCCAGGGTCTGGCGGGCAACGGCACGGCCCCGGACAACATAGAGATGGCCCTGCTCGC
CTCCTAAGGGTCCTGGTCCCATGCTCTTTGCCGATGACACGGCTTGGCCCCAGACTGAAC
CTCACTGCCTGCTCTCGGCAGGATCAGAGGGGACTTTTTTTTTAACTATAGCTTTTGGGG
GAAACTGGCCAGAAGAAAGGAACACAAAGTCAAAGTGGGGTGCAGATGTGAGAGCAAGCA
GACAGCGTGCGTTGGCTCTGGCGGCAAGGCTCTCGGACCTGAAGAAGTTTCCTCTCCTGT
TGCCTCCAGTCACTCAGTCAACAGCTTTGGAGAAAAGCCCCTTTCCCAGATCTGGTCCTT
AATCATGATGATGACTGGAGGTCCTTAACGATGTGGAGGACCTTTTATGGGCAGGACCCC
TTGGCTGGGGAGCCCTGGCAGCAGAGCCAGGTGATGATGACACTCACCAGCAGGCGCCCT
TCTATGAAACAGTGTGCAGCTCATTTGCACGTAACCGGACGCGTGGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61870662|ref|XP_595513.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61870662|ref|XP_595513.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               486-605, - strand, RNAz p=0.646374

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               486-605, - strand, RNAz p=0.646374

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               247-761, gnl|bosTau2|chr26 (15979026-15979538)
               

               
               247-761, gnl|Hg17|chr10 (105197319-105196815)
               

               
               247-761, gnl|Mm7|chr19 (47033674-47033168)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               247-761, gnl|bosTau2|chr26 (15979026-15979538)
               

               
               247-761, gnl|Hg17|chr10 (105197319-105196815)
               

               
               247-761, gnl|Mm7|chr19 (47033674-47033168)

	247-761, gnl\|bosTau2\|chr26 (15979026-15979538)
	247-761, gnl\|Hg17\|chr10 (105197319-105196815)
	247-761, gnl\|Mm7\|chr19 (47033674-47033168)