Ss1.1-Pig1-132A15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGGGCTCCGCCGTGATGCCGCGAGACGGACAGCGCGGGCAGCTCGGCGGACATGGCC GGGCTAAGGGGCTGGGCAGCCTACTGGCCTGGCTGATGCTGGCATCTGCGGGCGCCGCAT CCTGTCCCGAAGTCTGCTGCCCCCACGGCCCTTCGGGGCTGCGCTGCACGAAGGTTGCGG CCCTGGATATCATCCGCCACCTGCCGGGCGCCGAGAATCTGACGGAGCTCTACATCGAGA ACCAGCAGCACCTGCAGCATCTGACGCTCAGTGACCTGAGAGGCCTGGGGGAGCTGAGGA ACCTCACCATTGTGAAGAGTGGTCTCCGTTTCGTGGCGCCAGATGCTTTCCATTTCACTC CTCGGCTCAGTCATCTGAATCTCTCCTTCAATGCTCTGGAGTCTCTCTCCTGGAAAACCG TCCAGGGCCTCTCCTTACAGGAACTAGTCCTGTCGGGAAACCCTCTGCACTGTTCCTGTG CCCTGTTCTGGCTGCAGCGCTGGGAGCAGGAGGGGCGGGCCGGAGTGCGGGAACAGAAGC TGCAGTGTCCGGGCCAGGGACCCCTGGCCCTCATGCCCAATGCCAGCTGTGGTGAGCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGGGCTCCGCCGTGATGCCGCGAGACGGACAGCGCGGGCAGCTCGGCGGACATGGCC GGGCTAAGGGGCTGGGCAGCCTACTGGCCTGGCTGATGCTGGCATCTGCGGGCGCCGCAT CCTGTCCCGAAGTCTGCTGCCCCCACGGCCCTTCGGGGCTGCGCTGCACGAAGGTTGCGG CCCTGGATATCATCCGCCACCTGCCGGGCGCCGAGAATCTGACGGAGCTCTACATCGAGA ACCAGCAGCACCTGCAGCATCTGACGCTCAGTGACCTGAGAGGCCTGGGGGAGCTGAGGA ACCTCACCATTGTGAAGAGTGGTCTCCGTTTCGTGGCGCCAGATGCTTTCCATTTCACTC CTCGGCTCAGTCATCTGAATCTCTCCTTCAATGCTCTGGAGTCTCTCTCCTGGAAAACCG TCCAGGGCCTCTCCTTACAGGAACTAGTCCTGTCGGGAAACCCTCTGCACTGTTCCTGTG CCCTGTTCTGGCTGCAGCGCTGGGAGCAGGAGGGGCGGGCCGGAGTGCGGGAACAGAAGC TGCAGTGTCCGGGCCAGGGACCCCTGGCCCTCATGCCCAATGCCAGCTGTGGTGAGCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-119, + strand, RNAz p=0.778081 | |
| 5-120, - strand, RNAz p=0.788669 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-119, + strand, RNAz p=0.778081 | |
| 5-120, - strand, RNAz p=0.788669 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-229, gnl|bosTau2|chr3 (9889218-9889446) | |
| 1-229, gnl|canFam2|chr7 (44128382-44128017) | |
| 1-229, gnl|dasNov1|scaffold_33532 (17449-17081) | |
| 1-229, gnl|echTel1|scaffold_319023 (3513-3889) | |
| 1-229, gnl|hg17|chr1 (153643549-153643940) | |
| 1-229, gnl|Hg17|chr1 (153643783-153644011) | |
| 1-229, gnl|loxAfr1|scaffold_41519 (34027-33651) | |
| 1-229, gnl|mm7|chr3 (87909162-87908807) | |
| 1-229, gnl|Mm7|chr3 (87908962-87908734) | |
| 1-229, gnl|monDom2|scaffold_59 (420189-419776) | |
| 1-229, gnl|oryCun1|scaffold_199691 (133489-133861) | |
| 1-229, gnl|panTro1|chr1 (135608205-135608597) | |
| 1-229, gnl|rheMac2|chr1 (135470589-135470980) | |
| 1-229, gnl|rn3|chr2 (179805807-179805452) | |
| 446-593, gnl|bosTau2|chr3 (9895411-9895558) | |
| 446-593, gnl|canFam2|chr7 (44122137-44121958) | |
| 446-593, gnl|dasNov1|scaffold_33532 (10594-10412) | |
| 446-593, gnl|fr1|chrUn (59828611-59828444) | |
| 446-593, gnl|galGal2|chrUn (121791108-121791244) | |
| 446-593, gnl|hg17|chr1 (153650940-153651121) | |
| 446-593, gnl|Hg17|chr1 (153650969-153651116) | |
| 446-593, gnl|loxAfr1|scaffold_149886 (1041-1219) | |
| 446-593, gnl|mm7|chr3 (87902601-87902418) | |
| 446-593, gnl|Mm7|chr3 (87902574-87902421) | |
| 446-593, gnl|monDom2|scaffold_59 (409772-409628) | |
| 446-593, gnl|oryCun1|scaffold_199691 (139594-139777) | |
| 446-593, gnl|panTro1|chr1 (135615591-135615772) | |
| 446-593, gnl|rheMac2|chr1 (135478162-135478343) | |
| 446-593, gnl|rn3|chr2 (179799451-179799268) | |
| 446-593, gnl|xenTro1|scaffold_477 (710671-710859) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-229, gnl|bosTau2|chr3 (9889218-9889446) | |
| 1-229, gnl|canFam2|chr7 (44128382-44128017) | |
| 1-229, gnl|dasNov1|scaffold_33532 (17449-17081) | |
| 1-229, gnl|echTel1|scaffold_319023 (3513-3889) | |
| 1-229, gnl|hg17|chr1 (153643549-153643940) | |
| 1-229, gnl|Hg17|chr1 (153643783-153644011) | |
| 1-229, gnl|loxAfr1|scaffold_41519 (34027-33651) | |
| 1-229, gnl|mm7|chr3 (87909162-87908807) | |
| 1-229, gnl|Mm7|chr3 (87908962-87908734) | |
| 1-229, gnl|monDom2|scaffold_59 (420189-419776) | |
| 1-229, gnl|oryCun1|scaffold_199691 (133489-133861) | |
| 1-229, gnl|panTro1|chr1 (135608205-135608597) | |
| 1-229, gnl|rheMac2|chr1 (135470589-135470980) | |
| 1-229, gnl|rn3|chr2 (179805807-179805452) | |
| 446-593, gnl|bosTau2|chr3 (9895411-9895558) | |
| 446-593, gnl|canFam2|chr7 (44122137-44121958) | |
| 446-593, gnl|dasNov1|scaffold_33532 (10594-10412) | |
| 446-593, gnl|fr1|chrUn (59828611-59828444) | |
| 446-593, gnl|galGal2|chrUn (121791108-121791244) | |
| 446-593, gnl|hg17|chr1 (153650940-153651121) | |
| 446-593, gnl|Hg17|chr1 (153650969-153651116) | |
| 446-593, gnl|loxAfr1|scaffold_149886 (1041-1219) | |
| 446-593, gnl|mm7|chr3 (87902601-87902418) | |
| 446-593, gnl|Mm7|chr3 (87902574-87902421) | |
| 446-593, gnl|monDom2|scaffold_59 (409772-409628) | |
| 446-593, gnl|oryCun1|scaffold_199691 (139594-139777) | |
| 446-593, gnl|panTro1|chr1 (135615591-135615772) | |
| 446-593, gnl|rheMac2|chr1 (135478162-135478343) | |
| 446-593, gnl|rn3|chr2 (179799451-179799268) | |
| 446-593, gnl|xenTro1|scaffold_477 (710671-710859) |