Ss1.1-Pig1-132B06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGTCTGCAGGTCCCCTGATGATATGCTGCTCTCATGAGCCGGTCACCGAGTCTGTCTACT GCAGTCCTTCCTGAACCTTTGACTGTCCGGAAGCTCCACAGTGCTCCTTGCCAAGATGAA GTGCGTCTTGGTGGCCACGGAGGGTGCCGAGGTCCTCTTCTACTGGACAGATGAAGAGTT TAAAGAAAGTCTGCGGCTGAAGTTTGGGCAGTCAGAGAATGAGGGAGAAGAGCTTCCCGC CCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGCT GGAGAAGCTCTCAGACACATATACCTGCTTCTCCACGGAAAATGGCAGCTACCTGTATGT CCTTCAGCAGTTTGGAGAATGCCTGTTCATCGCTATCAACGGAGACCACACAGAGGGTGA GGGGGACCTGCGGCAGAAGCTGTGTGTGCTCAAGTACCTGTTCGAGGTGCACTTCGGGCT GGTTACCATGGACAGCCAGCTCATCCGAAAGGAGTTGCGGCCCCCAGACCTGGAGCAGCG TGTGCGGGTGTGGGAGCATTTCCAGAGCCTGCTGAGGACCTACGGCCGCCTGCGGGAGCA GGAGCAGTCTTTCGCAGTAGAGGCTGTGGAGCGGCTGATCCACCCTCAGCTCTGCGAGTT GTGCATAGAGACGCTGGAGCGGCACGTGGTCCAGGCCATCAACTCCAGCCCCAGACGGGC CGGTGAGGAGGCCCTGCACACCTTCCTGCTCGTGCACTCCAAGCTGCTGGCTTTCTACTC CAGCCACAGTGCCAGCTCCCTGCGCCCAGCCGACCTCCTTGCCCTCATCCTTCTGGTGCA GGACCTCTATCCCAGCGACAGCACAGCTGAGGACAGTGACATCCAGCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGTCTGCAGGTCCCCTGATGATATGCTGCTCTCATGAGCCGGTCACCGAGTCTGTCTACT GCAGTCCTTCCTGAACCTTTGACTGTCCGGAAGCTCCACAGTGCTCCTTGCCAAGATGAA GTGCGTCTTGGTGGCCACGGAGGGTGCCGAGGTCCTCTTCTACTGGACAGATGAAGAGTT TAAAGAAAGTCTGCGGCTGAAGTTTGGGCAGTCAGAGAATGAGGGAGAAGAGCTTCCCGC CCTGGAGGACCAGCTCAGCACCCTCCTGGCCCCAGTCATCATCTCCTCCATGACGATGCT GGAGAAGCTCTCAGACACATATACCTGCTTCTCCACGGAAAATGGCAGCTACCTGTATGT CCTTCAGCAGTTTGGAGAATGCCTGTTCATCGCTATCAACGGAGACCACACAGAGGGTGA GGGGGACCTGCGGCAGAAGCTGTGTGTGCTCAAGTACCTGTTCGAGGTGCACTTCGGGCT GGTTACCATGGACAGCCAGCTCATCCGAAAGGAGTTGCGGCCCCCAGACCTGGAGCAGCG TGTGCGGGTGTGGGAGCATTTCCAGAGCCTGCTGAGGACCTACGGCCGCCTGCGGGAGCA GGAGCAGTCTTTCGCAGTAGAGGCTGTGGAGCGGCTGATCCACCCTCAGCTCTGCGAGTT GTGCATAGAGACGCTGGAGCGGCACGTGGTCCAGGCCATCAACTCCAGCCCCAGACGGGC CGGTGAGGAGGCCCTGCACACCTTCCTGCTCGTGCACTCCAAGCTGCTGGCTTTCTACTC CAGCCACAGTGCCAGCTCCCTGCGCCCAGCCGACCTCCTTGCCCTCATCCTTCTGGTGCA GGACCTCTATCCCAGCGACAGCACAGCTGAGGACAGTGACATCCAGCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 398-515, + strand, RNAz p=0.985968 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 398-515, + strand, RNAz p=0.985968 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 96-228, gnl|bosTau2|chr26 (9888067-9888198) | |
| 96-228, gnl|canFam2|chr28 (14565954-14566068) | |
| 96-228, gnl|canFam2|chr28 (14565940-14566079) | |
| 96-228, gnl|danRer3|chr13 (41973567-41973443) | |
| 96-228, gnl|echTel1|scaffold_311640 (171405-171291) | |
| 96-228, gnl|echTel1|scaffold_311640 (171419-171280) | |
| 96-228, gnl|fr1|chrUn (118016582-118016727) | |
| 96-228, gnl|fr1|chrUn (118016599-118016730) | |
| 96-228, gnl|hg17|chr10 (100192860-100192999) | |
| 96-228, gnl|Hg17|chr10 (100193006-100192875) | |
| 96-228, gnl|hg17|chr22 (35258038-35258152) | |
| 96-228, gnl|mm7|chr19 (42671998-42672112) | |
| 96-228, gnl|mm7|chr19 (42671984-42672123) | |
| 96-228, gnl|Mm7|chr19 (42672130-42671999) | |
| 96-228, gnl|monDom2|scaffold_14 (23760380-23760240) | |
| 96-228, gnl|panTro1|chr23 (35420637-35420751) | |
| 96-228, gnl|panTro1|chr8 (101930957-101931096) | |
| 96-228, gnl|rheMac2|chr9 (98034451-98034565) | |
| 96-228, gnl|rheMac2|chr9 (98034437-98034576) | |
| 96-228, gnl|rn3|chr1 (248224713-248224599) | |
| 96-228, gnl|rn3|chr1 (248224727-248224588) | |
| 96-228, gnl|tetNig1|chr17 (5129287-5129442) | |
| 96-228, gnl|tetNig1|chr17 (5129321-5129445) | |
| 96-228, gnl|xenTro1|scaffold_51 (2681523-2681662) | |
| 367-515, gnl|bosTau2|chr26 (9892066-9892214) | |
| 367-515, gnl|canFam2|chr28 (14560783-14560952) | |
| 367-515, gnl|danRer3|chr13 (41979294-41979131) | |
| 367-515, gnl|echTel1|scaffold_2245 (971-811) | |
| 367-515, gnl|hg17|chr10 (100185015-100185185) | |
| 367-515, gnl|Hg17|chr10 (100185165-100185017) | |
| 367-515, gnl|loxAfr1|scaffold_53312 (372-202) | |
| 367-515, gnl|mm7|chr19 (42664623-42664788) | |
| 367-515, gnl|Mm7|chr19 (42664773-42664625) | |
| 367-515, gnl|monDom2|scaffold_14 (23771913-23771744) | |
| 367-515, gnl|oryCun1|scaffold_172482 (35806-35636) | |
| 367-515, gnl|panTro1|chr8 (101923096-101923266) | |
| 367-515, gnl|rheMac2|chr9 (98026231-98026401) | |
| 367-515, gnl|rn3|chr1 (248231951-248231786) | |
| 367-515, gnl|tetNig1|chr17 (5128023-5128182) | |
| 367-515, gnl|xenTro1|scaffold_51 (2678813-2678967) | |
| 621-783, gnl|bosTau2|chr26 (9895454-9895616) | |
| 621-783, gnl|canFam2|chr28 (14557777-14557964) | |
| 621-783, gnl|danRer3|chr13 (41980434-41980257) | |
| 621-783, gnl|dasNov1|scaffold_54246 (6398-6207) | |
| 621-783, gnl|echTel1|scaffold_53677 (1177-983) | |
| 621-783, gnl|fr1|chrUn (118014430-118014619) | |
| 621-783, gnl|hg17|chr10 (100180877-100181070) | |
| 621-783, gnl|Hg17|chr10 (100181040-100180878) | |
| 621-783, gnl|loxAfr1|scaffold_75050 (10580-10779) | |
| 621-783, gnl|mm7|chr19 (42660990-42661183) | |
| 621-783, gnl|Mm7|chr19 (42661153-42660991) | |
| 621-783, gnl|monDom2|scaffold_14 (23775393-23775198) | |
| 621-783, gnl|oryCun1|scaffold_172482 (39553-39359) | |
| 621-783, gnl|panTro1|chr8 (101918953-101919146) | |
| 621-783, gnl|rheMac2|chr9 (98022070-98022263) | |
| 621-783, gnl|rn3|chr1 (248235898-248235706) | |
| 621-783, gnl|tetNig1|chr17 (5127162-5127341) | |
| 621-783, gnl|xenTro1|scaffold_51 (2677518-2677711) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 96-228, gnl|bosTau2|chr26 (9888067-9888198) | |
| 96-228, gnl|canFam2|chr28 (14565954-14566068) | |
| 96-228, gnl|canFam2|chr28 (14565940-14566079) | |
| 96-228, gnl|danRer3|chr13 (41973567-41973443) | |
| 96-228, gnl|echTel1|scaffold_311640 (171405-171291) | |
| 96-228, gnl|echTel1|scaffold_311640 (171419-171280) | |
| 96-228, gnl|fr1|chrUn (118016582-118016727) | |
| 96-228, gnl|fr1|chrUn (118016599-118016730) | |
| 96-228, gnl|hg17|chr10 (100192860-100192999) | |
| 96-228, gnl|Hg17|chr10 (100193006-100192875) | |
| 96-228, gnl|hg17|chr22 (35258038-35258152) | |
| 96-228, gnl|mm7|chr19 (42671998-42672112) | |
| 96-228, gnl|mm7|chr19 (42671984-42672123) | |
| 96-228, gnl|Mm7|chr19 (42672130-42671999) | |
| 96-228, gnl|monDom2|scaffold_14 (23760380-23760240) | |
| 96-228, gnl|panTro1|chr23 (35420637-35420751) | |
| 96-228, gnl|panTro1|chr8 (101930957-101931096) | |
| 96-228, gnl|rheMac2|chr9 (98034451-98034565) | |
| 96-228, gnl|rheMac2|chr9 (98034437-98034576) | |
| 96-228, gnl|rn3|chr1 (248224713-248224599) | |
| 96-228, gnl|rn3|chr1 (248224727-248224588) | |
| 96-228, gnl|tetNig1|chr17 (5129287-5129442) | |
| 96-228, gnl|tetNig1|chr17 (5129321-5129445) | |
| 96-228, gnl|xenTro1|scaffold_51 (2681523-2681662) | |
| 367-515, gnl|bosTau2|chr26 (9892066-9892214) | |
| 367-515, gnl|canFam2|chr28 (14560783-14560952) | |
| 367-515, gnl|danRer3|chr13 (41979294-41979131) | |
| 367-515, gnl|echTel1|scaffold_2245 (971-811) | |
| 367-515, gnl|hg17|chr10 (100185015-100185185) | |
| 367-515, gnl|Hg17|chr10 (100185165-100185017) | |
| 367-515, gnl|loxAfr1|scaffold_53312 (372-202) | |
| 367-515, gnl|mm7|chr19 (42664623-42664788) | |
| 367-515, gnl|Mm7|chr19 (42664773-42664625) | |
| 367-515, gnl|monDom2|scaffold_14 (23771913-23771744) | |
| 367-515, gnl|oryCun1|scaffold_172482 (35806-35636) | |
| 367-515, gnl|panTro1|chr8 (101923096-101923266) | |
| 367-515, gnl|rheMac2|chr9 (98026231-98026401) | |
| 367-515, gnl|rn3|chr1 (248231951-248231786) | |
| 367-515, gnl|tetNig1|chr17 (5128023-5128182) | |
| 367-515, gnl|xenTro1|scaffold_51 (2678813-2678967) | |
| 621-783, gnl|bosTau2|chr26 (9895454-9895616) | |
| 621-783, gnl|canFam2|chr28 (14557777-14557964) | |
| 621-783, gnl|danRer3|chr13 (41980434-41980257) | |
| 621-783, gnl|dasNov1|scaffold_54246 (6398-6207) | |
| 621-783, gnl|echTel1|scaffold_53677 (1177-983) | |
| 621-783, gnl|fr1|chrUn (118014430-118014619) | |
| 621-783, gnl|hg17|chr10 (100180877-100181070) | |
| 621-783, gnl|Hg17|chr10 (100181040-100180878) | |
| 621-783, gnl|loxAfr1|scaffold_75050 (10580-10779) | |
| 621-783, gnl|mm7|chr19 (42660990-42661183) | |
| 621-783, gnl|Mm7|chr19 (42661153-42660991) | |
| 621-783, gnl|monDom2|scaffold_14 (23775393-23775198) | |
| 621-783, gnl|oryCun1|scaffold_172482 (39553-39359) | |
| 621-783, gnl|panTro1|chr8 (101918953-101919146) | |
| 621-783, gnl|rheMac2|chr9 (98022070-98022263) | |
| 621-783, gnl|rn3|chr1 (248235898-248235706) | |
| 621-783, gnl|tetNig1|chr17 (5127162-5127341) | |
| 621-783, gnl|xenTro1|scaffold_51 (2677518-2677711) |