Non-Coding RNA Search

Ss1.1-Pig1-132C21.5

Sequence:


               
               GTCAGGGCCACGGGCAGCCAGGGAGGAGGCCACGCTGGCCACTCGGGGGAACTCGTTGAT
CATGCGGATCTCGTCGTCCTCTGCGGCCTCTGCTGAGCCCCGGCCGCTCGAGTGCGAGGG
GTCCAGGGAGCCACCGCGGGGGTAGGGGCCTCCAGCTCCTGGCCCACCGTAGCTGGGGAG
AGTCTGGTGATACAGGTGCTCTGAGGGGGGTGGGCTGGGTGGCTCTCGGCCCAGCTTCTG
CAGGGAGCCGCTGGCCAGCGGCGCTGCCTGCGACATGGGGCCAGGCGCCGCCTCAGCCTT
GCGGCTACGCGCCCGCACCAGCCCTAGGACCAAGGCTGCCAGCGCGAGCACCACCACGAC
GCCCAGGGAGGCGGCCACCGCCCCCACCAAGAGCAGGTTGAGGTCGGGCGCCAGGCCCAG
CGCAGTGTGGGTGATGTCCACAGTCACGGGTACCGTGGCACTCCGGGAACCTGGCAGAGG
CCCCCGTGCCACCACCTTCAGCCTCAGCTCCCGCGGTGCCTCACGCCGGGTCCGGCCACC
ACCCGTAGAGGTGCCTGTTCCACTGCTTGGTGCCCGACTGTCCACCCGCAGGTACAGGGC
ACCTGTAGTCTGGTTGATGCCAAAGGAGGGGGAAGGGGTGGCCAGGAAATAGAGCACCAG
GCCGTCGGCACCTCCATCCTCATCTGTGGCCTGCACGTGACCCAGGCTGTGGCCACGCCG
GGCACCTTCTGGCACCTGGAAGTGGAAAGCTGGGGCCAGGAACACGGGGTCATATTCATC
CTCGCCTGTCACCAGCACTGACTCCGTGACCGAAGCCGACAGATTCCCAGCATCAGTCGC
CCCCACCAGCAACTGGAAGCTTCCTGTGTGCTCGTAGTCAAAGGCCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAGGGCCACGGGCAGCCAGGGAGGAGGCCACGCTGGCCACTCGGGGGAACTCGTTGAT
CATGCGGATCTCGTCGTCCTCTGCGGCCTCTGCTGAGCCCCGGCCGCTCGAGTGCGAGGG
GTCCAGGGAGCCACCGCGGGGGTAGGGGCCTCCAGCTCCTGGCCCACCGTAGCTGGGGAG
AGTCTGGTGATACAGGTGCTCTGAGGGGGGTGGGCTGGGTGGCTCTCGGCCCAGCTTCTG
CAGGGAGCCGCTGGCCAGCGGCGCTGCCTGCGACATGGGGCCAGGCGCCGCCTCAGCCTT
GCGGCTACGCGCCCGCACCAGCCCTAGGACCAAGGCTGCCAGCGCGAGCACCACCACGAC
GCCCAGGGAGGCGGCCACCGCCCCCACCAAGAGCAGGTTGAGGTCGGGCGCCAGGCCCAG
CGCAGTGTGGGTGATGTCCACAGTCACGGGTACCGTGGCACTCCGGGAACCTGGCAGAGG
CCCCCGTGCCACCACCTTCAGCCTCAGCTCCCGCGGTGCCTCACGCCGGGTCCGGCCACC
ACCCGTAGAGGTGCCTGTTCCACTGCTTGGTGCCCGACTGTCCACCCGCAGGTACAGGGC
ACCTGTAGTCTGGTTGATGCCAAAGGAGGGGGAAGGGGTGGCCAGGAAATAGAGCACCAG
GCCGTCGGCACCTCCATCCTCATCTGTGGCCTGCACGTGACCCAGGCTGTGGCCACGCCG
GGCACCTTCTGGCACCTGGAAGTGGAAAGCTGGGGCCAGGAACACGGGGTCATATTCATC
CTCGCCTGTCACCAGCACTGACTCCGTGACCGAAGCCGACAGATTCCCAGCATCAGTCGC
CCCCACCAGCAACTGGAAGCTTCCTGTGTGCTCGTAGTCAAAGGCCAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.919627

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.919627

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               140-426, + strand, RNAmicro p=0.997188

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               140-426, + strand, RNAmicro p=0.997188

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-888, gnl|bosTau2|chr15 (28917845-28918732)
               

               
               1-888, gnl|Hg17|chr11 (6600285-6601172)
               

               
               1-888, gnl|Mm7|chr7 (101810578-101811465)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-888, gnl|bosTau2|chr15 (28917845-28918732)
               

               
               1-888, gnl|Hg17|chr11 (6600285-6601172)
               

               
               1-888, gnl|Mm7|chr7 (101810578-101811465)

	1-888, gnl\|bosTau2\|chr15 (28917845-28918732)
	1-888, gnl\|Hg17\|chr11 (6600285-6601172)
	1-888, gnl\|Mm7\|chr7 (101810578-101811465)