Ss1.1-Pig1-132F03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCAGGATCGGGAGATCTCAGACCACGTCCTCCGAATGCACCGCTACCGGGCCCCCGGGG AACAGGACGGCGACGCAATGCCTTTGGGGAGTGCCGTGGATATCCTGGCCACGGATGACC CCAACTTTAGCCAGGAAGACCAGCAGGACACCCAGATTTATGAGAAGCATGACAACCTTC TGCATGGCACCAAGAAGAAAAAGGAGAAGATGGTGAGTGCGGCTTTCATGAAGAAATACA TCCACGTGGCCAAAATTATCAAGCCCGCCCTGACGCAGGAGTCGGCCGCCTACATCGCGG AGGAGTACTCCCGCCTGCGCAGCCAGGACAGCATGAGCTCTGACACCGCCCGGACATCTC CAGTGACAGCCCGGACGCTGGAAACTCTGATTCGATTGGCCACGGCCCATGCCAAGGCCC GCATGAGCAAGACGGTGGACCTGCAGGACGCGGAGGAGGCTGTGGAGCTGGTCCAGTATG CTTACTTCAAGAAGGTTCTCGAGAAGGAGAAGAAGCGTAAGAAGCGAAATGAGGATGACT CGGAGACAGAAGATGAAGGGGAGAAAAGCCAAGAGGACCAAGAGCAGAAGAGGAAGCGGA GAAAGACCCGTCACTCGGATGCCAAAGATGGAGACTCCTATGACCCCTATGACTTCAGTG ACACCGAGGAGGAAATGCCTCAGGTGCACACTCCCAAGGCGCCAGACTCGCAGGAGACCA AGGAGGCCCAGAAGGTGGAGCTGAGCGAGTCCAGGTTGAAGGCCTTCAAGGCAGCCCTCC TGGAGGTGTTCCAGGAAGCTCACGCACAATCGGTGGGCATGAATCGCCTCACAGAATCCA TCAACCGGGACAAGGAAGAGCCTTTCTCCTCCTCAGAGATCCAGGCTGCGCTGAGCCGGA TGCAGGATGACAACCAGGTCATGGTCTCCGAGGGCATCGTCTTCCTCATTTGAGGGGCCT CGTCTCTTGGGCTTTACATTTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCAGGATCGGGAGATCTCAGACCACGTCCTCCGAATGCACCGCTACCGGGCCCCCGGGG AACAGGACGGCGACGCAATGCCTTTGGGGAGTGCCGTGGATATCCTGGCCACGGATGACC CCAACTTTAGCCAGGAAGACCAGCAGGACACCCAGATTTATGAGAAGCATGACAACCTTC TGCATGGCACCAAGAAGAAAAAGGAGAAGATGGTGAGTGCGGCTTTCATGAAGAAATACA TCCACGTGGCCAAAATTATCAAGCCCGCCCTGACGCAGGAGTCGGCCGCCTACATCGCGG AGGAGTACTCCCGCCTGCGCAGCCAGGACAGCATGAGCTCTGACACCGCCCGGACATCTC CAGTGACAGCCCGGACGCTGGAAACTCTGATTCGATTGGCCACGGCCCATGCCAAGGCCC GCATGAGCAAGACGGTGGACCTGCAGGACGCGGAGGAGGCTGTGGAGCTGGTCCAGTATG CTTACTTCAAGAAGGTTCTCGAGAAGGAGAAGAAGCGTAAGAAGCGAAATGAGGATGACT CGGAGACAGAAGATGAAGGGGAGAAAAGCCAAGAGGACCAAGAGCAGAAGAGGAAGCGGA GAAAGACCCGTCACTCGGATGCCAAAGATGGAGACTCCTATGACCCCTATGACTTCAGTG ACACCGAGGAGGAAATGCCTCAGGTGCACACTCCCAAGGCGCCAGACTCGCAGGAGACCA AGGAGGCCCAGAAGGTGGAGCTGAGCGAGTCCAGGTTGAAGGCCTTCAAGGCAGCCCTCC TGGAGGTGTTCCAGGAAGCTCACGCACAATCGGTGGGCATGAATCGCCTCACAGAATCCA TCAACCGGGACAAGGAAGAGCCTTTCTCCTCCTCAGAGATCCAGGCTGCGCTGAGCCGGA TGCAGGATGACAACCAGGTCATGGTCTCCGAGGGCATCGTCTTCCTCATTTGAGGGGCCT CGTCTCTTGGGCTTTACATTTTTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 752-871, - strand, RNAz p=0.738553 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 752-871, - strand, RNAz p=0.738553 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 203-353, gnl|bosTau2|chr23 (22190358-22190208) | |
| 203-353, gnl|canFam2|chr12 (22932372-22932545) | |
| 203-353, gnl|danRer3|chr20 (43514910-43514747) | |
| 203-353, gnl|echTel1|scaffold_245911 (4063-4237) | |
| 203-353, gnl|fr1|chrUn (184812689-184812851) | |
| 203-353, gnl|galGal2|chr3 (105445830-105445654) | |
| 203-353, gnl|hg17|chr6 (52245051-52245224) | |
| 203-353, gnl|Hg17|chr6 (52245208-52245058) | |
| 203-353, gnl|loxAfr1|scaffold_34641 (1203-1376) | |
| 203-353, gnl|mm7|chr1 (21004312-21004484) | |
| 203-353, gnl|Mm7|chr1 (21004469-21004319) | |
| 203-353, gnl|monDom2|scaffold_0 (185087216-185087052) | |
| 203-353, gnl|panTro1|chr5 (53260772-53260945) | |
| 203-353, gnl|rheMac2|chr4 (51936746-51936919) | |
| 203-353, gnl|rn3|chr9 (19540223-19540395) | |
| 203-353, gnl|tetNig1|chr14 (983612-983772) | |
| 203-353, gnl|xenTro1|scaffold_55 (1923458-1923618) | |
| 493-599, gnl|bosTau2|chr23 (22188586-22188480) | |
| 493-599, gnl|canFam2|chr12 (22929108-22929417) | |
| 493-599, gnl|dasNov1|scaffold_22702 (17576-17270) | |
| 493-599, gnl|echTel1|scaffold_281458 (44959-44655) | |
| 493-599, gnl|hg17|chr6 (52240599-52240916) | |
| 493-599, gnl|Hg17|chr6 (52240727-52240621) | |
| 493-599, gnl|loxAfr1|scaffold_66819 (2982-3291) | |
| 493-599, gnl|mm7|chr1 (21001383-21001672) | |
| 493-599, gnl|Mm7|chr1 (21001500-21001394) | |
| 493-599, gnl|oryCun1|scaffold_211235 (38723-38435) | |
| 493-599, gnl|panTro1|chr5 (53256431-53256748) | |
| 493-599, gnl|rheMac2|chr4 (51932396-51932713) | |
| 493-599, gnl|rn3|chr9 (19536891-19537187) | |
| 752-973, gnl|bosTau2|chr23 (22186420-22186200) | |
| 752-973, gnl|Hg17|chr6 (52237546-52237326) | |
| 752-973, gnl|Mm7|chr1 (20999255-20999050) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 203-353, gnl|bosTau2|chr23 (22190358-22190208) | |
| 203-353, gnl|canFam2|chr12 (22932372-22932545) | |
| 203-353, gnl|danRer3|chr20 (43514910-43514747) | |
| 203-353, gnl|echTel1|scaffold_245911 (4063-4237) | |
| 203-353, gnl|fr1|chrUn (184812689-184812851) | |
| 203-353, gnl|galGal2|chr3 (105445830-105445654) | |
| 203-353, gnl|hg17|chr6 (52245051-52245224) | |
| 203-353, gnl|Hg17|chr6 (52245208-52245058) | |
| 203-353, gnl|loxAfr1|scaffold_34641 (1203-1376) | |
| 203-353, gnl|mm7|chr1 (21004312-21004484) | |
| 203-353, gnl|Mm7|chr1 (21004469-21004319) | |
| 203-353, gnl|monDom2|scaffold_0 (185087216-185087052) | |
| 203-353, gnl|panTro1|chr5 (53260772-53260945) | |
| 203-353, gnl|rheMac2|chr4 (51936746-51936919) | |
| 203-353, gnl|rn3|chr9 (19540223-19540395) | |
| 203-353, gnl|tetNig1|chr14 (983612-983772) | |
| 203-353, gnl|xenTro1|scaffold_55 (1923458-1923618) | |
| 493-599, gnl|bosTau2|chr23 (22188586-22188480) | |
| 493-599, gnl|canFam2|chr12 (22929108-22929417) | |
| 493-599, gnl|dasNov1|scaffold_22702 (17576-17270) | |
| 493-599, gnl|echTel1|scaffold_281458 (44959-44655) | |
| 493-599, gnl|hg17|chr6 (52240599-52240916) | |
| 493-599, gnl|Hg17|chr6 (52240727-52240621) | |
| 493-599, gnl|loxAfr1|scaffold_66819 (2982-3291) | |
| 493-599, gnl|mm7|chr1 (21001383-21001672) | |
| 493-599, gnl|Mm7|chr1 (21001500-21001394) | |
| 493-599, gnl|oryCun1|scaffold_211235 (38723-38435) | |
| 493-599, gnl|panTro1|chr5 (53256431-53256748) | |
| 493-599, gnl|rheMac2|chr4 (51932396-51932713) | |
| 493-599, gnl|rn3|chr9 (19536891-19537187) | |
| 752-973, gnl|bosTau2|chr23 (22186420-22186200) | |
| 752-973, gnl|Hg17|chr6 (52237546-52237326) | |
| 752-973, gnl|Mm7|chr1 (20999255-20999050) |