Non-Coding RNA Search

Ss1.1-Pig1-132L06.5

Sequence:


               
               GGCTGCCAAAGGAGAAGAGGCCTGAGCCCCAGGGCAGGCACCAGCCAGCCATGGCTGCAG
CAGAGACCGCCTTGCCCTCCATCAGCACGCTGACCACCCTGGGCCCCTTCTCGGACACAC
AGGAAGACTTCCTCAAGTGGTGGCGCTCTGAAGAGGTGCAGGACTTGGGCCCAGGTCCCC
CCGACCCCACCGGGCCACCCCTCCATGTGAGGCCGGAGTTGGAAGACGCACCCAAGGAGA
ACGAAGATGATGAGAGGGACGTGGCTACCCCCTGGGACCTGGATCTCCTCCTCACCAACT
TCCAGTGCCCAGAGCTGGGCAGCACATCCCAGACCTGCGCGCCCCAAACTTGCACCCTGG
CTCCTGGCGAGGGCCCTGGGGCGCAATTCCCAACGCCGCCCGATGTTCTGGGCACTTATG
CAGGCGGCCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTGCCAAAGGAGAAGAGGCCTGAGCCCCAGGGCAGGCACCAGCCAGCCATGGCTGCAG
CAGAGACCGCCTTGCCCTCCATCAGCACGCTGACCACCCTGGGCCCCTTCTCGGACACAC
AGGAAGACTTCCTCAAGTGGTGGCGCTCTGAAGAGGTGCAGGACTTGGGCCCAGGTCCCC
CCGACCCCACCGGGCCACCCCTCCATGTGAGGCCGGAGTTGGAAGACGCACCCAAGGAGA
ACGAAGATGATGAGAGGGACGTGGCTACCCCCTGGGACCTGGATCTCCTCCTCACCAACT
TCCAGTGCCCAGAGCTGGGCAGCACATCCCAGACCTGCGCGCCCCAAACTTGCACCCTGG
CTCCTGGCGAGGGCCCTGGGGCGCAATTCCCAACGCCGCCCGATGTTCTGGGCACTTATG
CAGGCGGCCCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               19-137, - strand, RNAz p=0.799493
               

               
               308-430, - strand, RNAz p=0.99898

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               19-137, - strand, RNAz p=0.799493
               

               
               308-430, - strand, RNAz p=0.99898

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-137, gnl|bosTau2|chr7 (8548180-8548044)
               

               
               1-137, gnl|Hg17|chr19 (12859004-12858868)
               

               
               1-137, gnl|Mm7|chr8 (83488089-83488225)
               


               
               189-430, gnl|bosTau2|chr7 (8547508-8547252)
               

               
               189-430, gnl|Hg17|chr19 (12857905-12857685)
               

               
               189-430, gnl|Mm7|chr8 (83488850-83489067)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr7 (8548180-8548044)
               

               
               1-137, gnl|Hg17|chr19 (12859004-12858868)
               

               
               1-137, gnl|Mm7|chr8 (83488089-83488225)
               


               
               189-430, gnl|bosTau2|chr7 (8547508-8547252)
               

               
               189-430, gnl|Hg17|chr19 (12857905-12857685)
               

               
               189-430, gnl|Mm7|chr8 (83488850-83489067)

	19-137, - strand, RNAz p=0.799493
	308-430, - strand, RNAz p=0.99898

	1-137, gnl\|bosTau2\|chr7 (8548180-8548044)
	1-137, gnl\|Hg17\|chr19 (12859004-12858868)
	1-137, gnl\|Mm7\|chr8 (83488089-83488225)

	189-430, gnl\|bosTau2\|chr7 (8547508-8547252)
	189-430, gnl\|Hg17\|chr19 (12857905-12857685)
	189-430, gnl\|Mm7\|chr8 (83488850-83489067)