Non-Coding RNA Search

Ss1.1-Pig1-132O18.5

Sequence:


               
               TGGGGTGGGGCAGGCAGGGGGTGAACAAACGGCCTGCCCTTTGCTCCCTCTCCCAGGGTC
TGGGAGCAGCAGGGGGCGGGGTCTGGCGCCTGCTAACCTCATTAGCACCGATCCTGAGAT
CCTGTGAGCCTGGGTCTGGCCCTGGGCTGGAGGAATCCAATTATCCATGGCTGCCTGGTG
GCTGCAGTGGAGCTTGGGATGCAAGGGACTCCCTTGAGTCCAGCCCGTGTTAGAGTTGTT
CTCCCCCTACCTCACCCCAGACTCTCCCCAGACCCCTTTGGCCTCTGAGGCAGGTTCCCT
GGCCCTGACACCCTGGTGAGCCCCCGTGCCCTCTAGTCTGGCCACTACTTTCTAAACAAG
GATATATTTTTTTATTTGATTTGCTTTCCCTCCACCCTCCACCCCCTGCCTTGTGTTTGC
CCAAGGCAGGAACTCACCCGATTAAGGCAAAGGGCAGCTTACCCTTCTCCCTGACCTGGG
GCACTGGGAGCCAGAAGGAGGCCCAGCCCCTTGTTCCTGCCCTGGAGACTTGGGCGGGTA
TGTGCAGGGCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGGTGGGGCAGGCAGGGGGTGAACAAACGGCCTGCCCTTTGCTCCCTCTCCCAGGGTC
TGGGAGCAGCAGGGGGCGGGGTCTGGCGCCTGCTAACCTCATTAGCACCGATCCTGAGAT
CCTGTGAGCCTGGGTCTGGCCCTGGGCTGGAGGAATCCAATTATCCATGGCTGCCTGGTG
GCTGCAGTGGAGCTTGGGATGCAAGGGACTCCCTTGAGTCCAGCCCGTGTTAGAGTTGTT
CTCCCCCTACCTCACCCCAGACTCTCCCCAGACCCCTTTGGCCTCTGAGGCAGGTTCCCT
GGCCCTGACACCCTGGTGAGCCCCCGTGCCCTCTAGTCTGGCCACTACTTTCTAAACAAG
GATATATTTTTTTATTTGATTTGCTTTCCCTCCACCCTCCACCCCCTGCCTTGTGTTTGC
CCAAGGCAGGAACTCACCCGATTAAGGCAAAGGGCAGCTTACCCTTCTCCCTGACCTGGG
GCACTGGGAGCCAGAAGGAGGCCCAGCCCCTTGTTCCTGCCCTGGAGACTTGGGCGGGTA
TGTGCAGGGCAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               22-311, - strand, RNAz p=0.974854
               

               
               352-510, - strand, RNAz p=0.971343

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               22-311, - strand, RNAz p=0.974854
               

               
               352-510, - strand, RNAz p=0.971343

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               50-129, + strand, RNAmicro p=0.990988
               

               
               19-161, - strand, RNAmicro p=0.949416

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               50-129, + strand, RNAmicro p=0.990988
               

               
               19-161, - strand, RNAmicro p=0.949416

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-552, gnl|bosTau2|chr7 (2834328-2834850)
               

               
               1-552, gnl|Hg17|chr19 (17212467-17211872)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-552, gnl|bosTau2|chr7 (2834328-2834850)
               

               
               1-552, gnl|Hg17|chr19 (17212467-17211872)

	22-311, - strand, RNAz p=0.974854
	352-510, - strand, RNAz p=0.971343

	50-129, + strand, RNAmicro p=0.990988
	19-161, - strand, RNAmicro p=0.949416

	1-552, gnl\|bosTau2\|chr7 (2834328-2834850)
	1-552, gnl\|Hg17\|chr19 (17212467-17211872)