Non-Coding RNA Search

Ss1.1-Pig1-138C15.5

Sequence:


               
               GGTTCGTTCTCCCTCCCTGTAAAGAATAATAAACCCAACTTCTCAACCATGAGTATGGTT
TCTGGTAGCCTTTGGTCGAGGCTACCAGACCTTTGACATGTTCCAATGCCTAGAATGCCC
TTCCCTAGATATTTGCATGGCTCTTTCCCTTAGTTCATTCCCCTCTTTGCTCATATATCA
TCTTTTCAGAGAGATTTTTCCTGGCTACACTGTTTACAATAGCACCCTCATCATTCTCTA
TCCCTTTAGACTGTTTATTTTTCCTCATAGCATTCATTACTATCTGATATTATATTATAT
ATTTAGATAATATGTTTATTGTATGGGTTTCCTATTAGAATCTAAGTTTCATGAAGGATA
GGACTTCATCTTGATGATTGGATCCACAGTGTGTAGAGCATTGCCTGGCACAAAATAAAT
ACTAACTGATAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTCGTTCTCCCTCCCTGTAAAGAATAATAAACCCAACTTCTCAACCATGAGTATGGTT
TCTGGTAGCCTTTGGTCGAGGCTACCAGACCTTTGACATGTTCCAATGCCTAGAATGCCC
TTCCCTAGATATTTGCATGGCTCTTTCCCTTAGTTCATTCCCCTCTTTGCTCATATATCA
TCTTTTCAGAGAGATTTTTCCTGGCTACACTGTTTACAATAGCACCCTCATCATTCTCTA
TCCCTTTAGACTGTTTATTTTTCCTCATAGCATTCATTACTATCTGATATTATATTATAT
ATTTAGATAATATGTTTATTGTATGGGTTTCCTATTAGAATCTAAGTTTCATGAAGGATA
GGACTTCATCTTGATGATTGGATCCACAGTGTGTAGAGCATTGCCTGGCACAAAATAAAT
ACTAACTGATAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               159-278, - strand, RNAz p=0.701241

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-278, - strand, RNAz p=0.701241

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               2-372, gnl|bosTau2|chrX (1612686-1613043)
               

               
               2-372, gnl|canFam2|chrX (95305269-95305729)
               

               
               2-372, gnl|hg17|chrX (119162483-119162975)
               

               
               2-372, gnl|Hg17|chrX (119162481-119162839)
               

               
               2-372, gnl|panTro1|chrX_random (9096579-9096087)
               

               
               2-372, gnl|rheMac2|chrX (118460103-118460583)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-372, gnl|bosTau2|chrX (1612686-1613043)
               

               
               2-372, gnl|canFam2|chrX (95305269-95305729)
               

               
               2-372, gnl|hg17|chrX (119162483-119162975)
               

               
               2-372, gnl|Hg17|chrX (119162481-119162839)
               

               
               2-372, gnl|panTro1|chrX_random (9096579-9096087)
               

               
               2-372, gnl|rheMac2|chrX (118460103-118460583)

	2-372, gnl\|bosTau2\|chrX (1612686-1613043)
	2-372, gnl\|canFam2\|chrX (95305269-95305729)
	2-372, gnl\|hg17\|chrX (119162483-119162975)
	2-372, gnl\|Hg17\|chrX (119162481-119162839)
	2-372, gnl\|panTro1\|chrX_random (9096579-9096087)
	2-372, gnl\|rheMac2\|chrX (118460103-118460583)