Non-Coding RNA Search

Ss1.1-Pig1-13B15.5

Sequence:


               
               GGCTTTATAAGCGGCTCATCACCTTCCAGATTCTAAAACGCAGTGCTCGGTCCCCAGCCT
GGGGGACTGGGGAGACTGCAGCAAGTCAAGGCCCTGGGCTGGGGCACCAGGCACTGTGGA
TCCCGGGACCTGCCAGGCCTAAGCTCCTCCTCCCAAGCCACCTGTGGCTGCCCACCCCTC
TTCCTGAGCATCCCCTCTGCCAAAAAGACATTGGAACTGGAGACGGGGACTCAGGGTAGG
GACCTCGAGGAGCCCCGCCTTGAACTGCTCACCCTCATTTAAGATTGGAGGGTTCAACCA
AAGAGAAGCCCCCCACGTAAGGGACGCTTTTCCCATCTGTGGCTTCAGTGGAGGGAAGAA
CTCAAGGCGCTCCCCACCACCCGCTCCCGGCTCCGGTCACAAAGGAGGGGCGGCTCCCAG
GCGTCCTTCCCGCGAGGACCCACTTCTTCTTCCCTGTACAGGACTTTGCACAACTTTGGT
TTCAAAAGCTGTTGAAAAATAGGAAGACAAAGGGCATTGTTCACAGATAGGACCCATCTC
CCCTGCGCGGGCACCTCTGCTCGCCCCCTCCCCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTTATAAGCGGCTCATCACCTTCCAGATTCTAAAACGCAGTGCTCGGTCCCCAGCCT
GGGGGACTGGGGAGACTGCAGCAAGTCAAGGCCCTGGGCTGGGGCACCAGGCACTGTGGA
TCCCGGGACCTGCCAGGCCTAAGCTCCTCCTCCCAAGCCACCTGTGGCTGCCCACCCCTC
TTCCTGAGCATCCCCTCTGCCAAAAAGACATTGGAACTGGAGACGGGGACTCAGGGTAGG
GACCTCGAGGAGCCCCGCCTTGAACTGCTCACCCTCATTTAAGATTGGAGGGTTCAACCA
AAGAGAAGCCCCCCACGTAAGGGACGCTTTTCCCATCTGTGGCTTCAGTGGAGGGAAGAA
CTCAAGGCGCTCCCCACCACCCGCTCCCGGCTCCGGTCACAAAGGAGGGGCGGCTCCCAG
GCGTCCTTCCCGCGAGGACCCACTTCTTCTTCCCTGTACAGGACTTTGCACAACTTTGGT
TTCAAAAGCTGTTGAAAAATAGGAAGACAAAGGGCATTGTTCACAGATAGGACCCATCTC
CCCTGCGCGGGCACCTCTGCTCGCCCCCTCCCCCTC

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               92-189, - strand, RNAz p=0.514449
               

               
               193-387, - strand, RNAz p=0.966709

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               92-189, - strand, RNAz p=0.514449
               

               
               193-387, - strand, RNAz p=0.966709

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               25-139, + strand, RNAmicro p=0.950181

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               25-139, + strand, RNAmicro p=0.950181

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_005220, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_005220, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               13-574, gnl|bosTau2|chr19 (29407604-29408166)
               

               
               13-574, gnl|canFam2|chr9 (29342551-29343318)
               

               
               13-574, gnl|echTel1|scaffold_292762 (6306-5529)
               

               
               13-574, gnl|hg17|chr17 (45422901-45423674)
               

               
               13-574, gnl|Hg17|chr17 (45423579-45423025)
               

               
               13-574, gnl|loxAfr1|scaffold_6013 (13142-12354)
               

               
               13-574, gnl|mm7|chr11 (95233769-95233006)
               

               
               13-574, gnl|Mm7|chr11 (95233094-95233619)
               

               
               13-574, gnl|monDom2|scaffold_18 (43479422-43478645)
               

               
               13-574, gnl|oryCun1|scaffold_175406 (48184-48916)
               

               
               13-574, gnl|panTro1|chr19_random (31031787-31032560)
               

               
               13-574, gnl|rheMac2|chr16 (34234654-34235422)
               

               
               13-574, gnl|rn3|chr10 (83821318-83820560)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               13-574, gnl|bosTau2|chr19 (29407604-29408166)
               

               
               13-574, gnl|canFam2|chr9 (29342551-29343318)
               

               
               13-574, gnl|echTel1|scaffold_292762 (6306-5529)
               

               
               13-574, gnl|hg17|chr17 (45422901-45423674)
               

               
               13-574, gnl|Hg17|chr17 (45423579-45423025)
               

               
               13-574, gnl|loxAfr1|scaffold_6013 (13142-12354)
               

               
               13-574, gnl|mm7|chr11 (95233769-95233006)
               

               
               13-574, gnl|Mm7|chr11 (95233094-95233619)
               

               
               13-574, gnl|monDom2|scaffold_18 (43479422-43478645)
               

               
               13-574, gnl|oryCun1|scaffold_175406 (48184-48916)
               

               
               13-574, gnl|panTro1|chr19_random (31031787-31032560)
               

               
               13-574, gnl|rheMac2|chr16 (34234654-34235422)
               

               
               13-574, gnl|rn3|chr10 (83821318-83820560)

	92-189, - strand, RNAz p=0.514449
	193-387, - strand, RNAz p=0.966709

	13-574, gnl\|bosTau2\|chr19 (29407604-29408166)
	13-574, gnl\|canFam2\|chr9 (29342551-29343318)
	13-574, gnl\|echTel1\|scaffold_292762 (6306-5529)
	13-574, gnl\|hg17\|chr17 (45422901-45423674)
	13-574, gnl\|Hg17\|chr17 (45423579-45423025)
	13-574, gnl\|loxAfr1\|scaffold_6013 (13142-12354)
	13-574, gnl\|mm7\|chr11 (95233769-95233006)
	13-574, gnl\|Mm7\|chr11 (95233094-95233619)
	13-574, gnl\|monDom2\|scaffold_18 (43479422-43478645)
	13-574, gnl\|oryCun1\|scaffold_175406 (48184-48916)
	13-574, gnl\|panTro1\|chr19_random (31031787-31032560)
	13-574, gnl\|rheMac2\|chr16 (34234654-34235422)
	13-574, gnl\|rn3\|chr10 (83821318-83820560)