Non-Coding RNA Search

Ss1.1-Pig1-14J10.5

Sequence:


               
               ATCCGAGGAGAGTCCGACTCCAGTTGGTAAAGTTTTCAAAGCGGCGGCAGGAGCGGCTCC
CGGCGGCCAAACAAACGGCAGCGGGCTGGACGGAGCCCGCCGGAGCCGAGACCGTGCGGA
GCGGAGCTCAGCCCGGGTTACAAGCTCAAGGCAGGCCTCCCGACACTCTCGGGACTGCGC
CTGTGGCTCAGCCAGGCCGCCATGCAGACTCTGCCCCCCCAGGTCAAGACTGGCGTTTTA
AAATAAAATGGATGATGCGACGTTACTTGATCTTCTGGAGTGCCCCGTGTGCCTTGAAAA
GCTCGATGTCACCGCCAAAGTCCTGCCCTGCCAGCACACCTTCTGCAGACCATGTCTCCA
GAGGATTTTCAAGGCCCACAAGGAGCTGCGGTGCCCCGAATGCCGGACCCTGGCCTTCTG
CAGCATCGAGGCGCTGCCGGCCAACCTGCTGCTCGTGCGTCTTCTGGACGGCGTGCGCTC
GGGACAGGGCTCGGGGACCAGGGGCTCCTTCCGAAGGCCTGGCGTGCTGACCTCGCAGGA
CGGCAAGAAAAGCAGGACTCACCCCAGGGGTCTGCCGTGCAGCCCTTTCCGGCTGGTGCC
GAACGTCAGAATCCACATGGATGGGGTAAGAGCGATCTCATTTGTGCTGTCTTGTCCGCT
GGGAGGCTGGGTTTGTGCGCTCCAGCAGTTTGGGGTGCTCTTCTTTTAGTTATGTTTCAA
AGAGCTGCCGAGGATTCCCCGGGGATACGTTTCTGGAGGCGGTGATCCTTTTGCTGCAAC
TTGGTGGAATCCTGAGCCTCGCTACCCCACCAGGAATTCTTAGAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCCGAGGAGAGTCCGACTCCAGTTGGTAAAGTTTTCAAAGCGGCGGCAGGAGCGGCTCC
CGGCGGCCAAACAAACGGCAGCGGGCTGGACGGAGCCCGCCGGAGCCGAGACCGTGCGGA
GCGGAGCTCAGCCCGGGTTACAAGCTCAAGGCAGGCCTCCCGACACTCTCGGGACTGCGC
CTGTGGCTCAGCCAGGCCGCCATGCAGACTCTGCCCCCCCAGGTCAAGACTGGCGTTTTA
AAATAAAATGGATGATGCGACGTTACTTGATCTTCTGGAGTGCCCCGTGTGCCTTGAAAA
GCTCGATGTCACCGCCAAAGTCCTGCCCTGCCAGCACACCTTCTGCAGACCATGTCTCCA
GAGGATTTTCAAGGCCCACAAGGAGCTGCGGTGCCCCGAATGCCGGACCCTGGCCTTCTG
CAGCATCGAGGCGCTGCCGGCCAACCTGCTGCTCGTGCGTCTTCTGGACGGCGTGCGCTC
GGGACAGGGCTCGGGGACCAGGGGCTCCTTCCGAAGGCCTGGCGTGCTGACCTCGCAGGA
CGGCAAGAAAAGCAGGACTCACCCCAGGGGTCTGCCGTGCAGCCCTTTCCGGCTGGTGCC
GAACGTCAGAATCCACATGGATGGGGTAAGAGCGATCTCATTTGTGCTGTCTTGTCCGCT
GGGAGGCTGGGTTTGTGCGCTCCAGCAGTTTGGGGTGCTCTTCTTTTAGTTATGTTTCAA
AGAGCTGCCGAGGATTCCCCGGGGATACGTTTCTGGAGGCGGTGATCCTTTTGCTGCAAC
TTGGTGGAATCCTGAGCCTCGCTACCCCACCAGGAATTCTTAGAATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61867044|ref|XP_618647.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61867044|ref|XP_618647.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               333-452, - strand, RNAz p=0.594278

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               333-452, - strand, RNAz p=0.594278

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               175-828, gnl|bosTau2|chr7 (38035602-38036257)
               

               
               175-828, gnl|Hg17|chr5 (145297611-145298270)
               

               
               175-828, gnl|Mm7|chr18 (42431658-42432328)
               


               
               248-501, gnl|bosTau2|chr11 (31640152-31640405)
               

               
               248-501, gnl|Hg17|chr2 (109204650-109204903)
               

               
               248-501, gnl|Mm7|chr10 (58331890-58332143)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               175-828, gnl|bosTau2|chr7 (38035602-38036257)
               

               
               175-828, gnl|Hg17|chr5 (145297611-145298270)
               

               
               175-828, gnl|Mm7|chr18 (42431658-42432328)
               


               
               248-501, gnl|bosTau2|chr11 (31640152-31640405)
               

               
               248-501, gnl|Hg17|chr2 (109204650-109204903)
               

               
               248-501, gnl|Mm7|chr10 (58331890-58332143)

	175-828, gnl\|bosTau2\|chr7 (38035602-38036257)
	175-828, gnl\|Hg17\|chr5 (145297611-145298270)
	175-828, gnl\|Mm7\|chr18 (42431658-42432328)

	248-501, gnl\|bosTau2\|chr11 (31640152-31640405)
	248-501, gnl\|Hg17\|chr2 (109204650-109204903)
	248-501, gnl\|Mm7\|chr10 (58331890-58332143)