Non-Coding RNA Search

Ss1.1-Pig1-14L08.5

Sequence:


               
               GCCCTTTTGTGTTAGAGAGAAAAAGCTTCCTTCCTCTGGGCAGAGGCCGCTCCGTGGCAC
AGAGCTTGAGAGCTCCTCCCCCCTGGCTCCCAGTCCCTGCACCAGTGCCTCTCCCCACAG
CCCCGACTCCACCACCTGGAAGGGCCAGAACGGTCGCACATTCAAAATGGGCAACTTCCC
AGCCTCGGCAGTGACGCTGGTAGACTCAGGGGGCTCGCCAGCCAGCCATCTGCTCCCCAG
AGGCGCCCCTGCCCGAGGAGAGCACCACCAGGGAAACATCAGTGGGGACAGAGCGAAGGC
AAAGCTTCGGGATCCCCCTCCAGCTCAAGGCCAGAGAAGGAACATGGCCCTGCAGAGGTC
GAAAGGCATTTCCAAGAGCCTGGAGTCAGTTCTGTCCCTGGGCCCCCGCCCCACAGGAGG
GGGGTCCAGCCCCCCTGAACTTCGACATGCCAGAATGGGGCCCCAGGGCGCCCCGGGCCT
GCCACCCCGCCCTCCCGTTGCCGCCAGCTCGTCTTCCCAGCCCAGCCAGCCTCCCAGGGA
GCGGCCTCCCTGGCCCAAAAGAGAACTCCCCCACAGTCAGCCCACAGGAGCGCCGGGGGC
CAGCAAAGCCACTGTCCCCTCCAGAGGACCCCTGCCTGACTTCGAGCTGCAGAGGAGGAT
TACAGAGGTGGAGCTGAGCGTGCATGGAGTCACCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTTTTGTGTTAGAGAGAAAAAGCTTCCTTCCTCTGGGCAGAGGCCGCTCCGTGGCAC
AGAGCTTGAGAGCTCCTCCCCCCTGGCTCCCAGTCCCTGCACCAGTGCCTCTCCCCACAG
CCCCGACTCCACCACCTGGAAGGGCCAGAACGGTCGCACATTCAAAATGGGCAACTTCCC
AGCCTCGGCAGTGACGCTGGTAGACTCAGGGGGCTCGCCAGCCAGCCATCTGCTCCCCAG
AGGCGCCCCTGCCCGAGGAGAGCACCACCAGGGAAACATCAGTGGGGACAGAGCGAAGGC
AAAGCTTCGGGATCCCCCTCCAGCTCAAGGCCAGAGAAGGAACATGGCCCTGCAGAGGTC
GAAAGGCATTTCCAAGAGCCTGGAGTCAGTTCTGTCCCTGGGCCCCCGCCCCACAGGAGG
GGGGTCCAGCCCCCCTGAACTTCGACATGCCAGAATGGGGCCCCAGGGCGCCCCGGGCCT
GCCACCCCGCCCTCCCGTTGCCGCCAGCTCGTCTTCCCAGCCCAGCCAGCCTCCCAGGGA
GCGGCCTCCCTGGCCCAAAAGAGAACTCCCCCACAGTCAGCCCACAGGAGCGCCGGGGGC
CAGCAAAGCCACTGTCCCCTCCAGAGGACCCCTGCCTGACTTCGAGCTGCAGAGGAGGAT
TACAGAGGTGGAGCTGAGCGTGCATGGAGTCACCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5F2B6_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5F2B6_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               364-633, - strand, RNAz p=0.935228

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-633, - strand, RNAz p=0.935228

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-277, gnl|bosTau2|chr19 (20857755-20857467)
               

               
               1-277, gnl|Hg17|chr17 (7230887-7231189)
               

               
               1-277, gnl|Mm7|chr11 (69934967-69934699)
               


               
               364-670, gnl|bosTau2|chr19 (20856694-20856400)
               

               
               364-670, gnl|Hg17|chr17 (7232447-7232750)
               

               
               364-670, gnl|Mm7|chr11 (69933861-69933546)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-277, gnl|bosTau2|chr19 (20857755-20857467)
               

               
               1-277, gnl|Hg17|chr17 (7230887-7231189)
               

               
               1-277, gnl|Mm7|chr11 (69934967-69934699)
               


               
               364-670, gnl|bosTau2|chr19 (20856694-20856400)
               

               
               364-670, gnl|Hg17|chr17 (7232447-7232750)
               

               
               364-670, gnl|Mm7|chr11 (69933861-69933546)

	1-277, gnl\|bosTau2\|chr19 (20857755-20857467)
	1-277, gnl\|Hg17\|chr17 (7230887-7231189)
	1-277, gnl\|Mm7\|chr11 (69934967-69934699)

	364-670, gnl\|bosTau2\|chr19 (20856694-20856400)
	364-670, gnl\|Hg17\|chr17 (7232447-7232750)
	364-670, gnl\|Mm7\|chr11 (69933861-69933546)