Non-Coding RNA Search

Ss1.1-Pig1-16A20.5

Sequence:


               
               GCCAATATTTGCTAAAACTCTGATCTCTATTTCAGACCCTTGACCAACAACTTAGTTATT
CAATAGGTAAGCATTTTCATATCACATATAGTTCATCTTTTTCAAAATGCAGTGTCATCT
CTCAAGACTGTCAGATGTTTAATAACAAAACTGATAAAGGGAAGAAGAAAGGCACATTGA
CTTTGATCCTTGTGGTTTAAGTTGTGAGTTTGTGTTAACATTATATAAATAGTAGGTTGT
TTATACATATGTGGGGGGAAGTGTTCCTATTAAGCTCTTTAAAACAAGGAGACTTGTTGA
GAGTTTTATATTTTTGCTTATTTTAAAACTTTAATTATTCCATTCTTCTGCCTTATCATG
AAGCTACAAAGGCAGAGAACTGAACTAATTATAGAATTTCTCCTTTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCAATATTTGCTAAAACTCTGATCTCTATTTCAGACCCTTGACCAACAACTTAGTTATT
CAATAGGTAAGCATTTTCATATCACATATAGTTCATCTTTTTCAAAATGCAGTGTCATCT
CTCAAGACTGTCAGATGTTTAATAACAAAACTGATAAAGGGAAGAAGAAAGGCACATTGA
CTTTGATCCTTGTGGTTTAAGTTGTGAGTTTGTGTTAACATTATATAAATAGTAGGTTGT
TTATACATATGTGGGGGGAAGTGTTCCTATTAAGCTCTTTAAAACAAGGAGACTTGTTGA
GAGTTTTATATTTTTGCTTATTTTAAAACTTTAATTATTCCATTCTTCTGCCTTATCATG
AAGCTACAAAGGCAGAGAACTGAACTAATTATAGAATTTCTCCTTTGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               279-408, + strand, RNAz p=0.995936

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               279-408, + strand, RNAz p=0.995936

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               300-408, ap17a05.x1 Schiller oligodendroglioma Homo sapiens cDNA clone 
(gb|AI366515.1|), blast E-value=4e-32, identity=91.74% 
               

               
               337-408, 7b58a10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BE550727.1|), blast E-value=4e-17, identity=91.67% 
               

               
               300-356, ir47h11.x5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK902997.1|), 
blast E-value=0.000000000000002, identity=94.74% 
               

               
               312-408, 1271427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526643.1|), 
blast E-value=6e-25, identity=91.75% 
               

               
               312-408, HW_LIVER_49_H09 Bos taurus CF-24-HW liver cDNA library Bos taurus 
(gb|DV788190.1|), blast E-value=6e-25, identity=91.75% 
               

               
               312-408, Hw_liver_18_050715_F04 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV790811.1|), blast E-value=6e-25, identity=91.75%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               300-408, ap17a05.x1 Schiller oligodendroglioma Homo sapiens cDNA clone 
(gb|AI366515.1|), blast E-value=4e-32, identity=91.74% 
               

               
               337-408, 7b58a10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE 
(gb|BE550727.1|), blast E-value=4e-17, identity=91.67% 
               

               
               300-356, ir47h11.x5 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CK902997.1|), 
blast E-value=0.000000000000002, identity=94.74% 
               

               
               312-408, 1271427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN526643.1|), 
blast E-value=6e-25, identity=91.75% 
               

               
               312-408, HW_LIVER_49_H09 Bos taurus CF-24-HW liver cDNA library Bos taurus 
(gb|DV788190.1|), blast E-value=6e-25, identity=91.75% 
               

               
               312-408, Hw_liver_18_050715_F04 Bos taurus CF-24-HW liver cDNA library Bos 
(gb|DV790811.1|), blast E-value=6e-25, identity=91.75%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-408, gnl|bosTau2|chr2 (19222651-19223050)
               

               
               4-408, gnl|Hg17|chr12 (103699992-103699595)
               

               
               4-408, gnl|Mm7|chr10 (82774019-82773684)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-408, gnl|bosTau2|chr2 (19222651-19223050)
               

               
               4-408, gnl|Hg17|chr12 (103699992-103699595)
               

               
               4-408, gnl|Mm7|chr10 (82774019-82773684)

	300-408, ap17a05.x1 Schiller oligodendroglioma Homo sapiens cDNA clone (gb\|AI366515.1\|), blast E-value=4e-32, identity=91.74%
	337-408, 7b58a10.x1 NCI_CGAP_Lu24 Homo sapiens cDNA clone IMAGE (gb\|BE550727.1\|), blast E-value=4e-17, identity=91.67%
	300-356, ir47h11.x5 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CK902997.1\|), blast E-value=0.000000000000002, identity=94.74%
	312-408, 1271427 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN526643.1\|), blast E-value=6e-25, identity=91.75%
	312-408, HW_LIVER_49_H09 Bos taurus CF-24-HW liver cDNA library Bos taurus (gb\|DV788190.1\|), blast E-value=6e-25, identity=91.75%
	312-408, Hw_liver_18_050715_F04 Bos taurus CF-24-HW liver cDNA library Bos (gb\|DV790811.1\|), blast E-value=6e-25, identity=91.75%

	4-408, gnl\|bosTau2\|chr2 (19222651-19223050)
	4-408, gnl\|Hg17\|chr12 (103699992-103699595)
	4-408, gnl\|Mm7\|chr10 (82774019-82773684)