Non-Coding RNA Search

Ss1.1-Pig1-16H01.5

Sequence:


               
               GCTGAGCCCTGGCCCAGCACGATGACAGCGACCCACCCACCTACAGGTGGCCCATGCGCT
ACGACCAATGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGACCAAGGTGAGACCC
TGCAGGAGGATGTCAAGAGTCCTGCCCTATTTAGAGGCGCTGGGGTCCCCAGCTAACCAG
ATGGGGACCTGCTTATTATCCCGTTATAACCTCTTGAGTGCCCCAGCTGAAAGCATCTGC
CATTTCAGGGGGCGGCTTCCGGGATAGCCTGGCAGACATGTCAGAGGAACTCTGCCCTAG
TTCGGCAGACACCCCTGTGCCTCTGCCCTTCTTTGTACGCACGGCCAACCAGGTAACCTC
CCACCCCTACCTCCCCAGTTGTTTCTTCTATTCTGTCTCTGCAAACCTCCCAGGTACCAG
GCTCAGCCTCAGAGGGGGCAGAGGAGACTGAGTCGCCTGGGGCAGCCTCTGGGCAAACAG
GGAAGGAGGAGCCACTGTACATTCAGAGGGATCATTCGGGGCCCCCAGTGGAAGGTGTTC
AGGGACGTCTTCGGGGAGTCTGGGGCGACAAGCTAAGGTCTACCCCATGCCAAGCTGACA
GCTCTGTTTCGGGGGCAGGGCAATGGCACGGGTGAGGCCCGGGACATGTACGTGCCCAAC
CCCTCCTGCCGAGACTTTGCCAAGTACGAGTGGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAGCCCTGGCCCAGCACGATGACAGCGACCCACCCACCTACAGGTGGCCCATGCGCT
ACGACCAATGGTGGGAGTGTAAATTCATTGCAGAAGGCATCATTGACCAAGGTGAGACCC
TGCAGGAGGATGTCAAGAGTCCTGCCCTATTTAGAGGCGCTGGGGTCCCCAGCTAACCAG
ATGGGGACCTGCTTATTATCCCGTTATAACCTCTTGAGTGCCCCAGCTGAAAGCATCTGC
CATTTCAGGGGGCGGCTTCCGGGATAGCCTGGCAGACATGTCAGAGGAACTCTGCCCTAG
TTCGGCAGACACCCCTGTGCCTCTGCCCTTCTTTGTACGCACGGCCAACCAGGTAACCTC
CCACCCCTACCTCCCCAGTTGTTTCTTCTATTCTGTCTCTGCAAACCTCCCAGGTACCAG
GCTCAGCCTCAGAGGGGGCAGAGGAGACTGAGTCGCCTGGGGCAGCCTCTGGGCAAACAG
GGAAGGAGGAGCCACTGTACATTCAGAGGGATCATTCGGGGCCCCCAGTGGAAGGTGTTC
AGGGACGTCTTCGGGGAGTCTGGGGCGACAAGCTAAGGTCTACCCCATGCCAAGCTGACA
GCTCTGTTTCGGGGGCAGGGCAATGGCACGGGTGAGGCCCGGGACATGTACGTGCCCAAC
CCCTCCTGCCGAGACTTTGCCAAGTACGAGTGGATC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               153-249, + strand, RNAz p=0.999147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               153-249, + strand, RNAz p=0.999147

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               169-256, + strand, RNAmicro p=0.953361

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               169-256, + strand, RNAmicro p=0.953361

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-696, gnl|bosTau2|chr3 (68325000-68324271)
               

               
               4-696, gnl|Hg17|chr1 (45141825-45140804)
               

               
               4-696, gnl|Mm7|chr4 (116376483-116377113)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-696, gnl|bosTau2|chr3 (68325000-68324271)
               

               
               4-696, gnl|Hg17|chr1 (45141825-45140804)
               

               
               4-696, gnl|Mm7|chr4 (116376483-116377113)

	4-696, gnl\|bosTau2\|chr3 (68325000-68324271)
	4-696, gnl\|Hg17\|chr1 (45141825-45140804)
	4-696, gnl\|Mm7\|chr4 (116376483-116377113)