Non-Coding RNA Search

Ss1.1-Pig1-16N11.5

Sequence:


               
               GGGGGGCGACATCCTCCGGGGTCTACCAGGTATCCATCTTTTCCCCTCCAGCTGGTGCCT
CCGAGCCCCATAGGGCCCTGAAACGGCCAGCCCCACCCACTGAGGGTCCCCGGGAGCTGA
AGAGAGGCCCTGGGCTGGGGGCCAGAGAGGGACTACCCCCTGAAGAACTATCTACTGTGG
GGCTATTGGGCCCAGAGGGACTGGGTGTGGCCAGCCAACATTTCTGCCATCATGGCCTCC
ATGTTGTGGAACAGGGAGGTAGCTCCACCTCACCTTGGACTTCCGGGGCCTGGAGTCCCC
CCTGTCCCCCATCAAATGCTTCCTGCAATACTTTGCACACCAGAGACTGGGCTTCCCCAG
ATCCAGGGGGACAGGGGTCCCTGGGGGAGTCCCCAGGGCCAGCCCCTCCGGGCCAGCTGC
ACACACTTGACACTGATTTGCACAGTCTTGCACAAACAGGGGGTAAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGCGACATCCTCCGGGGTCTACCAGGTATCCATCTTTTCCCCTCCAGCTGGTGCCT
CCGAGCCCCATAGGGCCCTGAAACGGCCAGCCCCACCCACTGAGGGTCCCCGGGAGCTGA
AGAGAGGCCCTGGGCTGGGGGCCAGAGAGGGACTACCCCCTGAAGAACTATCTACTGTGG
GGCTATTGGGCCCAGAGGGACTGGGTGTGGCCAGCCAACATTTCTGCCATCATGGCCTCC
ATGTTGTGGAACAGGGAGGTAGCTCCACCTCACCTTGGACTTCCGGGGCCTGGAGTCCCC
CCTGTCCCCCATCAAATGCTTCCTGCAATACTTTGCACACCAGAGACTGGGCTTCCCCAG
ATCCAGGGGGACAGGGGTCCCTGGGGGAGTCCCCAGGGCCAGCCCCTCCGGGCCAGCTGC
ACACACTTGACACTGATTTGCACAGTCTTGCACAAACAGGGGGTAAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               121-468, - strand, RNAz p=0.993858

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-468, - strand, RNAz p=0.993858

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               67-204, - strand, RNAmicro p=0.933723

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               67-204, - strand, RNAmicro p=0.933723

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               197-201, DA395949 BRTHA2 Homo sapiens cDNA clone BRTHA2035529 5', mRNA 
(dbj|DA395949.1|), blast E-value=3e-23, identity=95.77% 
               

               
               197-201, DA886780 PUAEN2 Homo sapiens cDNA clone PUAEN2007132 5', mRNA 
(dbj|DA886780.1|), blast E-value=4e-16, identity=94.92% 
               

               
               197-201, DB160395 THYMU3 Homo sapiens cDNA clone THYMU3040521 5', mRNA 
(dbj|DB160395.1|), blast E-value=3e-29, identity=96.3% 
               

               
               214-468, AGENCOURT_7970738 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BU183703.1|), blast E-value=0, identity=93.33% 
               

               
               197-201, 4302 Full Length cDNA from the Mammalian Gene Collection Homo 
(gb|CV026382.1|), blast E-value=3e-29, identity=96.3% 
               

               
               197-201, HESC4_10_F09.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866426.1|), blast E-value=3e-29, identity=96.3%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               197-201, DA395949 BRTHA2 Homo sapiens cDNA clone BRTHA2035529 5', mRNA 
(dbj|DA395949.1|), blast E-value=3e-23, identity=95.77% 
               

               
               197-201, DA886780 PUAEN2 Homo sapiens cDNA clone PUAEN2007132 5', mRNA 
(dbj|DA886780.1|), blast E-value=4e-16, identity=94.92% 
               

               
               197-201, DB160395 THYMU3 Homo sapiens cDNA clone THYMU3040521 5', mRNA 
(dbj|DB160395.1|), blast E-value=3e-29, identity=96.3% 
               

               
               214-468, AGENCOURT_7970738 NIH_MGC_72 Homo sapiens cDNA clone IMAGE 
(gb|BU183703.1|), blast E-value=0, identity=93.33% 
               

               
               197-201, 4302 Full Length cDNA from the Mammalian Gene Collection Homo 
(gb|CV026382.1|), blast E-value=3e-29, identity=96.3% 
               

               
               197-201, HESC4_10_F09.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866426.1|), blast E-value=3e-29, identity=96.3%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-468, gnl|bosTau2|chr8 (27894599-27894120)
               

               
               1-468, gnl|Hg17|chr9 (35098153-35097674)
               

               
               1-468, gnl|Mm7|chr4 (43050425-43049946)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-468, gnl|bosTau2|chr8 (27894599-27894120)
               

               
               1-468, gnl|Hg17|chr9 (35098153-35097674)
               

               
               1-468, gnl|Mm7|chr4 (43050425-43049946)

	197-201, DA395949 BRTHA2 Homo sapiens cDNA clone BRTHA2035529 5', mRNA (dbj\|DA395949.1\|), blast E-value=3e-23, identity=95.77%
	197-201, DA886780 PUAEN2 Homo sapiens cDNA clone PUAEN2007132 5', mRNA (dbj\|DA886780.1\|), blast E-value=4e-16, identity=94.92%
	197-201, DB160395 THYMU3 Homo sapiens cDNA clone THYMU3040521 5', mRNA (dbj\|DB160395.1\|), blast E-value=3e-29, identity=96.3%
	214-468, AGENCOURT_7970738 NIH_MGC_72 Homo sapiens cDNA clone IMAGE (gb\|BU183703.1\|), blast E-value=0, identity=93.33%
	197-201, 4302 Full Length cDNA from the Mammalian Gene Collection Homo (gb\|CV026382.1\|), blast E-value=3e-29, identity=96.3%
	197-201, HESC4_10_F09.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone (gb\|CX866426.1\|), blast E-value=3e-29, identity=96.3%

	1-468, gnl\|bosTau2\|chr8 (27894599-27894120)
	1-468, gnl\|Hg17\|chr9 (35098153-35097674)
	1-468, gnl\|Mm7\|chr4 (43050425-43049946)