Non-Coding RNA Search

Ss1.1-Pig1-18N22.5

Sequence:


               
               GGCGAGGCTACCAGCTCAGCGACGTGGACGGGGTCACCTGCGAAGACATCGACGAGTGTG
CCCTGCCCACGGGGGGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGGAGCTTCC
AGTGCAGCTGCCCCCCGACCGGCTACCGGCTGGCCCCCAACGGTCGCAACTGCCAAGACA
TCGATGAGTGTGTGACCGGCATCCACAACTGCTCCATCAACGAGACCTGCTTCAACATCC
AGGGCAGCTTCCGCTGCCTGGCCTTCGAGTGTCCCGAGAACTACCGCCGCTCCACAGACG
CGCTCCGCCAAGAGAAGACAGATACTGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATG
TCGCCTGCGTGCTGGACCCGGTGCACACCATCTCCCACACCGTCGTCTCACTCCCCACCT
TCCGCGAGTTCACCCGCCCCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGAGGCTACCAGCTCAGCGACGTGGACGGGGTCACCTGCGAAGACATCGACGAGTGTG
CCCTGCCCACGGGGGGCCACATCTGCTCCTACCGCTGCATCAACATCCCTGGGAGCTTCC
AGTGCAGCTGCCCCCCGACCGGCTACCGGCTGGCCCCCAACGGTCGCAACTGCCAAGACA
TCGATGAGTGTGTGACCGGCATCCACAACTGCTCCATCAACGAGACCTGCTTCAACATCC
AGGGCAGCTTCCGCTGCCTGGCCTTCGAGTGTCCCGAGAACTACCGCCGCTCCACAGACG
CGCTCCGCCAAGAGAAGACAGATACTGTCCGCTGCATCAAGTCCTGCCGCCCCAACGATG
TCGCCTGCGTGCTGGACCCGGTGCACACCATCTCCCACACCGTCGTCTCACTCCCCACCT
TCCGCGAGTTCACCCGCCCCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               59-177, - strand, RNAz p=0.666664

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               59-177, - strand, RNAz p=0.666664

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               44-177, gnl|bosTau2|chr5 (74566667-74566534)
               

               
               44-177, gnl|canFam2|chr10 (23592580-23592399)
               

               
               44-177, gnl|echTel1|scaffold_254123 (5064-4926)
               

               
               44-177, gnl|fr1|chrUn (93567461-93567646)
               

               
               44-177, gnl|galGal2|chr1 (67079150-67079301)
               

               
               44-177, gnl|hg17|chr22 (44265007-44265204)
               

               
               44-177, gnl|Hg17|chr22 (44265028-44265161)
               

               
               44-177, gnl|loxAfr1|scaffold_12059 (32634-32437)
               

               
               44-177, gnl|mm7|chr15 (85324302-85324490)
               

               
               44-177, gnl|Mm7|chr15 (85324330-85324463)
               

               
               44-177, gnl|monDom2|scaffold_107 (406703-406868)
               

               
               44-177, gnl|oryCun1|scaffold_88614 (929-759)
               

               
               44-177, gnl|panTro1|chr23 (44602656-44602853)
               

               
               44-177, gnl|rheMac2|chr10 (89550300-89550497)
               

               
               44-177, gnl|rn3|chr7 (123277154-123277335)
               

               
               44-177, gnl|tetNig1|chr13 (8651200-8651368)
               

               
               44-177, gnl|xenTro1|scaffold_1023 (174730-174917)

Aligned organism(s): 17 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-177, gnl|bosTau2|chr5 (74566667-74566534)
               

               
               44-177, gnl|canFam2|chr10 (23592580-23592399)
               

               
               44-177, gnl|echTel1|scaffold_254123 (5064-4926)
               

               
               44-177, gnl|fr1|chrUn (93567461-93567646)
               

               
               44-177, gnl|galGal2|chr1 (67079150-67079301)
               

               
               44-177, gnl|hg17|chr22 (44265007-44265204)
               

               
               44-177, gnl|Hg17|chr22 (44265028-44265161)
               

               
               44-177, gnl|loxAfr1|scaffold_12059 (32634-32437)
               

               
               44-177, gnl|mm7|chr15 (85324302-85324490)
               

               
               44-177, gnl|Mm7|chr15 (85324330-85324463)
               

               
               44-177, gnl|monDom2|scaffold_107 (406703-406868)
               

               
               44-177, gnl|oryCun1|scaffold_88614 (929-759)
               

               
               44-177, gnl|panTro1|chr23 (44602656-44602853)
               

               
               44-177, gnl|rheMac2|chr10 (89550300-89550497)
               

               
               44-177, gnl|rn3|chr7 (123277154-123277335)
               

               
               44-177, gnl|tetNig1|chr13 (8651200-8651368)
               

               
               44-177, gnl|xenTro1|scaffold_1023 (174730-174917)

	44-177, gnl\|bosTau2\|chr5 (74566667-74566534)
	44-177, gnl\|canFam2\|chr10 (23592580-23592399)
	44-177, gnl\|echTel1\|scaffold_254123 (5064-4926)
	44-177, gnl\|fr1\|chrUn (93567461-93567646)
	44-177, gnl\|galGal2\|chr1 (67079150-67079301)
	44-177, gnl\|hg17\|chr22 (44265007-44265204)
	44-177, gnl\|Hg17\|chr22 (44265028-44265161)
	44-177, gnl\|loxAfr1\|scaffold_12059 (32634-32437)
	44-177, gnl\|mm7\|chr15 (85324302-85324490)
	44-177, gnl\|Mm7\|chr15 (85324330-85324463)
	44-177, gnl\|monDom2\|scaffold_107 (406703-406868)
	44-177, gnl\|oryCun1\|scaffold_88614 (929-759)
	44-177, gnl\|panTro1\|chr23 (44602656-44602853)
	44-177, gnl\|rheMac2\|chr10 (89550300-89550497)
	44-177, gnl\|rn3\|chr7 (123277154-123277335)
	44-177, gnl\|tetNig1\|chr13 (8651200-8651368)
	44-177, gnl\|xenTro1\|scaffold_1023 (174730-174917)