Non-Coding RNA Search

Ss1.1-Pig1-19A10.5

Sequence:


               
               GATTGAAAGTATCTTTTTTAGACACAAACTTCTTCAGCAAAATGATTCAGCTATCATGTC
ATCTTTGTGACAGTTGTTATAAGATTTGAAATATGTTCAAAATATTTCTCTAGGAGTATC
TTCTGCCAAACTGTCTTTATAATATCTCCCCCAAGTTATAATATTCTTAATAAGATCAGA
AACTCTCCAGGAGAGTGAATCTACCTTTATGTCCTTGTAGGATGATATTGATTACAGTCA
TTATAGGACTATAATTGTGCTCCCCAACATTTCTCCAGAAAGGACCTTGACTGTCAAAAG
GTCTTTTGTACAACAGTACCGCTTTCTTAACCCCTTCAATTAAAAAAAAAAAAAAAAAGG
GGGGAGCTAAAAAAAAGTAGTGAAAAGCCCTTTTTTTTTGAAGCCCTTGAGGGGGGAAAA
ACCCATTGGGGGGGGGATGGAAATGTTTTTCCATGCTTTTAAACCAAAAAGGAAAGGGGC
ATGGATTTGTGCTGTTTTGTCAAACAATGAAACATAAAGGTTTTTAAGGGGGGAAGGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATTGAAAGTATCTTTTTTAGACACAAACTTCTTCAGCAAAATGATTCAGCTATCATGTC
ATCTTTGTGACAGTTGTTATAAGATTTGAAATATGTTCAAAATATTTCTCTAGGAGTATC
TTCTGCCAAACTGTCTTTATAATATCTCCCCCAAGTTATAATATTCTTAATAAGATCAGA
AACTCTCCAGGAGAGTGAATCTACCTTTATGTCCTTGTAGGATGATATTGATTACAGTCA
TTATAGGACTATAATTGTGCTCCCCAACATTTCTCCAGAAAGGACCTTGACTGTCAAAAG
GTCTTTTGTACAACAGTACCGCTTTCTTAACCCCTTCAATTAAAAAAAAAAAAAAAAAGG
GGGGAGCTAAAAAAAAGTAGTGAAAAGCCCTTTTTTTTTGAAGCCCTTGAGGGGGGAAAA
ACCCATTGGGGGGGGGATGGAAATGTTTTTCCATGCTTTTAAACCAAAAAGGAAAGGGGC
ATGGATTTGTGCTGTTTTGTCAAACAATGAAACATAAAGGTTTTTAAGGGGGGAAGGGAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               147-291, - strand, RNAz p=0.876089

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-291, - strand, RNAz p=0.876089

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               99-233, - strand, RNAmicro p=0.947846

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               99-233, - strand, RNAmicro p=0.947846

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               2-540, gnl|bosTau2|chr8 (55766337-55766863)
               

               
               2-540, gnl|Hg17|chr9 (111495499-111496044)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-540, gnl|bosTau2|chr8 (55766337-55766863)
               

               
               2-540, gnl|Hg17|chr9 (111495499-111496044)

	2-540, gnl\|bosTau2\|chr8 (55766337-55766863)
	2-540, gnl\|Hg17\|chr9 (111495499-111496044)