Non-Coding RNA Search

Ss1.1-Pig1-21F01.5

Sequence:


               
               CCAAAGCAGGCTGGTACAGGTCAGGCAATACCAGGTATTCGTCGTGACTGCGACACAGCC
ACTTGTACCCGAGTTCTCGATCTTCATCATGTCGGAGACTGCTCCTGCCGCTCCCGCCGC
CGCGCCTCCTGCGGAGAAGACCCCGGTCAAGAAGAAGGCCGCCAAGAAGCCTGCTGGGGC
GCGCCGTAAGGCGTCTGGACCCCCAGTGTCCGAGCTCATCACCAAGGCTGTCGCTGCCTC
CAAGGAGCGCAGCGGCGTGTCCCTGGCTGCGCTCAAGAAGGCGCTGGCGGCTGCTGGCTA
CGATGTGGAGAAGAATAACAGCCGCATCAAGCTGGGTCTCAAGAGCCTGGTGAGCAAGGG
CACCTTGGTACAGACCAAGGGCACTGGGGCTTCTGGCTCCTTTAAGCTCAACAAGAAGGC
GGCCACCGGTGAGACCAAGCCCAAGGCCAAGAAGTCGGGCGCGGCCAAGCCCAAGAAAAG
TGCTGGGGCAGCCAAGAAGCCCAAGAAGGCCACGGGCTCGGCCACCCCGAAAAAAGCCGC
TAAGAAGACCCCGAAGAAGGCGAAGAAGCCGGCCGCAGCTGCTGTGACCAAGAAAGTGGC
CAAGAGCCCAAAGAAAGCTAAGGCTGCCAAACCTAAGAAGGCTGCCAAGAGCGCGGCTAA
GGCAGTGAAGCCCAAGGCCGCCAAGCCCAAGGTTGCAAAGCCCAAGAAGGCTGCACCCAA
AAAGAAGTAGGTTGCTGAACGTCTGCTTCTAAAACCCAAAAAGGCTCTTTTCAGAGCCAC
CGATGCGAGGGGTGTAGAGGAAGGGTGGCGGTTCTTGAAGCCCTGGGTGCGTTTAGAAGC
CTCCCGGCGCTCCACCACCTGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAAGCAGGCTGGTACAGGTCAGGCAATACCAGGTATTCGTCGTGACTGCGACACAGCC
ACTTGTACCCGAGTTCTCGATCTTCATCATGTCGGAGACTGCTCCTGCCGCTCCCGCCGC
CGCGCCTCCTGCGGAGAAGACCCCGGTCAAGAAGAAGGCCGCCAAGAAGCCTGCTGGGGC
GCGCCGTAAGGCGTCTGGACCCCCAGTGTCCGAGCTCATCACCAAGGCTGTCGCTGCCTC
CAAGGAGCGCAGCGGCGTGTCCCTGGCTGCGCTCAAGAAGGCGCTGGCGGCTGCTGGCTA
CGATGTGGAGAAGAATAACAGCCGCATCAAGCTGGGTCTCAAGAGCCTGGTGAGCAAGGG
CACCTTGGTACAGACCAAGGGCACTGGGGCTTCTGGCTCCTTTAAGCTCAACAAGAAGGC
GGCCACCGGTGAGACCAAGCCCAAGGCCAAGAAGTCGGGCGCGGCCAAGCCCAAGAAAAG
TGCTGGGGCAGCCAAGAAGCCCAAGAAGGCCACGGGCTCGGCCACCCCGAAAAAAGCCGC
TAAGAAGACCCCGAAGAAGGCGAAGAAGCCGGCCGCAGCTGCTGTGACCAAGAAAGTGGC
CAAGAGCCCAAAGAAAGCTAAGGCTGCCAAACCTAAGAAGGCTGCCAAGAGCGCGGCTAA
GGCAGTGAAGCCCAAGGCCGCCAAGCCCAAGGTTGCAAAGCCCAAGAAGGCTGCACCCAA
AAAGAAGTAGGTTGCTGAACGTCTGCTTCTAAAACCCAAAAAGGCTCTTTTCAGAGCCAC
CGATGCGAGGGGTGTAGAGGAAGGGTGGCGGTTCTTGAAGCCCTGGGTGCGTTTAGAAGC
CTCCCGGCGCTCCACCACCTGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53DY7_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53DY7_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               284-443, + strand, RNAz p=0.813262
               

               
               669-781, - strand, RNAz p=0.879912

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               284-443, + strand, RNAz p=0.813262
               

               
               669-781, - strand, RNAz p=0.879912

ncRNA annotation: 1 entry(ies)

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ncRNA annotation: 1 entry(ies)

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               758-783, , RaveNnA Score=34.85

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               758-783, , RaveNnA Score=34.85

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               88-781, gnl|bosTau2|chr12 (1644961-1644240)
               

               
               88-781, gnl|Hg17|chr6 (26343141-26342421)
               

               
               88-781, gnl|Mm7|chr13 (22921082-22921798)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               88-781, gnl|bosTau2|chr12 (1644961-1644240)
               

               
               88-781, gnl|Hg17|chr6 (26343141-26342421)
               

               
               88-781, gnl|Mm7|chr13 (22921082-22921798)

	284-443, + strand, RNAz p=0.813262
	669-781, - strand, RNAz p=0.879912

	88-781, gnl\|bosTau2\|chr12 (1644961-1644240)
	88-781, gnl\|Hg17\|chr6 (26343141-26342421)
	88-781, gnl\|Mm7\|chr13 (22921082-22921798)