Non-Coding RNA Search

Ss1.1-Pig1-22B12.5

Sequence:


               
               AAGATGCTGGGGGCTGCTTCAGGGATCCTGATGCCCAGCCAAGAGAGCTCAGAGTCACAT
TTTCCCCCTCAAATCCTGGCTATATATCCTTTTGCATCCCCTGTTAATATCTTTCAGAAG
GAGAGCTTCTTGTAGAAGAATAAGATGGAGCTGAGGCCACCCTGTCCTGTTCTATTGCTT
GTGTATTTCTTAACCTGTGAGGCAGCCTGGTGCTAGTAAGACCCCTACACCCTCAACTGC
TTAGGGAGCAGAGTTGTGTCTCTAACTAGAAGTCAAAACGATGAACATTTTGTAATTTCT
CCAGCCACTCACTCTTGGGGAGTCCAATGTGTTTTATGAACATGCTTCTATCCATTTATG
TTTCTATCAAGAAACTGGCCAGGTCATTATACCCCAATGAACACAGAGAATGGAATCTTA
AGTTCTTAGTTCCTGCTCCAGGCTTTAAGTGGCTTTCTAGACTAATGCCATGTTGACTTG
TCTAGTAAGAAT------------TACTACAGGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGATGCTGGGGGCTGCTTCAGGGATCCTGATGCCCAGCCAAGAGAGCTCAGAGTCACAT
TTTCCCCCTCAAATCCTGGCTATATATCCTTTTGCATCCCCTGTTAATATCTTTCAGAAG
GAGAGCTTCTTGTAGAAGAATAAGATGGAGCTGAGGCCACCCTGTCCTGTTCTATTGCTT
GTGTATTTCTTAACCTGTGAGGCAGCCTGGTGCTAGTAAGACCCCTACACCCTCAACTGC
TTAGGGAGCAGAGTTGTGTCTCTAACTAGAAGTCAAAACGATGAACATTTTGTAATTTCT
CCAGCCACTCACTCTTGGGGAGTCCAATGTGTTTTATGAACATGCTTCTATCCATTTATG
TTTCTATCAAGAAACTGGCCAGGTCATTATACCCCAATGAACACAGAGAATGGAATCTTA
AGTTCTTAGTTCCTGCTCCAGGCTTTAAGTGGCTTTCTAGACTAATGCCATGTTGACTTG
TCTAGTAAGAAT------------TACTACAGGAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               8-108, - strand, RNAz p=0.71062

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               8-108, - strand, RNAz p=0.71062

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               8-492, gnl|bosTau2|chr15 (49061183-49061653)
               

               
               8-492, gnl|Hg17|chr11 (47212176-47211343)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-492, gnl|bosTau2|chr15 (49061183-49061653)
               

               
               8-492, gnl|Hg17|chr11 (47212176-47211343)

	8-492, gnl\|bosTau2\|chr15 (49061183-49061653)
	8-492, gnl\|Hg17\|chr11 (47212176-47211343)