Non-Coding RNA Search

Ss1.1-Pig1-24H04.5

Sequence:


               
               GCACCTTTGCACCTTGCGCAGTGATGGCTTCACTGCCCTCCAGGAGAAGCAGGCTGGCAG
TGGGCACGGAGATCTGACCCCTCCCTCTGAACTCAAGGCCAACCCTACCAGGAGGACAGC
GGTGGTGCAAACGCAAAGCTCCAGGCCCTGGGGAGTCATTTGCTGTGGATATTGGACCCT
GCTTGTTGCAGCTGCCAAGTCCCGAGCCACAGGCCAGCAGGTGTTTTGTGTTTTGCCGGC
CTGTCATGTAAACATACTTTGTGGTCGTCTTGCTTGTTTTAAAAAGGGCCTAAATGGTTT
TGCAGCTTTGGCGGTAGACTTGGAGCTGCAGGCCCAGCGGGGAGGAGAAGCTTCAGACAC
ACAGCCTGAGGAATGCCACGCAGGCCTGTTAATCCACTGCTTGCCAAGCGCCAGCTATGT
CCAAGGCCACGGAGGCAGATCAGAGAAGGACAGGAGTTGATCTTGCCTGTCAAGGAGTTT
CGCACCTAGTAGGGACAGCAAAGCACTTCCATGGATCCTTACGGGGAAGTTTAGGGTCCC
GAAAGTGATGGTGCTGGAGCCTCGTCTTCCCCGTCAGCTGTTCAATGAGCTGTTCCCTTC
CCCCCTGCCAGCCCCTCTCTCAAAGGGAGAGGCGAGCCCTGGCCAAACGATGGCTGGGAG
GGGGGTCTGGGCTGAGCCAGGGGCCCTTGAGCAGGCGGAGCTGTGGCAGGAAAGGGGAGG
AGGTGCAGAGAGCACCCAGGCTTCCTGGCAGAGGAAACAGCAGGAGCAAAGACCTGGACG
CCCAAGTGTGTGAGTGCGCTGGAAAGTGGCAAGTGACCCTGTTTGGCTGGAAGTTTCAGA
CAACGAGGAGGAGCAGGGCAGATAACACACAGTCAAGGGGAAAACTTTCCCACATCTTTT
ATCCAGATGTTAAGACGCCTGCCAGAGTGCAGGAAGAGAGTTTTCCAAAACTCGTTTTTA
TAATTCAGAAATGGAGTGTGTCTGCTCCCCAGCGCATCTTAAACACAGCCCCAGACCTCC
CATTACCCCCTCTTGTTGATTGAGAGCTTGACCTCAAAAATGCCCCCAGCCGCTGTCCTG
GCAGTACACGTAATGAAAGAAGACTTTCTCCGCCAGCGCATTTGGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTTTGCACCTTGCGCAGTGATGGCTTCACTGCCCTCCAGGAGAAGCAGGCTGGCAG
TGGGCACGGAGATCTGACCCCTCCCTCTGAACTCAAGGCCAACCCTACCAGGAGGACAGC
GGTGGTGCAAACGCAAAGCTCCAGGCCCTGGGGAGTCATTTGCTGTGGATATTGGACCCT
GCTTGTTGCAGCTGCCAAGTCCCGAGCCACAGGCCAGCAGGTGTTTTGTGTTTTGCCGGC
CTGTCATGTAAACATACTTTGTGGTCGTCTTGCTTGTTTTAAAAAGGGCCTAAATGGTTT
TGCAGCTTTGGCGGTAGACTTGGAGCTGCAGGCCCAGCGGGGAGGAGAAGCTTCAGACAC
ACAGCCTGAGGAATGCCACGCAGGCCTGTTAATCCACTGCTTGCCAAGCGCCAGCTATGT
CCAAGGCCACGGAGGCAGATCAGAGAAGGACAGGAGTTGATCTTGCCTGTCAAGGAGTTT
CGCACCTAGTAGGGACAGCAAAGCACTTCCATGGATCCTTACGGGGAAGTTTAGGGTCCC
GAAAGTGATGGTGCTGGAGCCTCGTCTTCCCCGTCAGCTGTTCAATGAGCTGTTCCCTTC
CCCCCTGCCAGCCCCTCTCTCAAAGGGAGAGGCGAGCCCTGGCCAAACGATGGCTGGGAG
GGGGGTCTGGGCTGAGCCAGGGGCCCTTGAGCAGGCGGAGCTGTGGCAGGAAAGGGGAGG
AGGTGCAGAGAGCACCCAGGCTTCCTGGCAGAGGAAACAGCAGGAGCAAAGACCTGGACG
CCCAAGTGTGTGAGTGCGCTGGAAAGTGGCAAGTGACCCTGTTTGGCTGGAAGTTTCAGA
CAACGAGGAGGAGCAGGGCAGATAACACACAGTCAAGGGGAAAACTTTCCCACATCTTTT
ATCCAGATGTTAAGACGCCTGCCAGAGTGCAGGAAGAGAGTTTTCCAAAACTCGTTTTTA
TAATTCAGAAATGGAGTGTGTCTGCTCCCCAGCGCATCTTAAACACAGCCCCAGACCTCC
CATTACCCCCTCTTGTTGATTGAGAGCTTGACCTCAAAAATGCCCCCAGCCGCTGTCCTG
GCAGTACACGTAATGAAAGAAGACTTTCTCCGCCAGCGCATTTGGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               727-842, - strand, RNAz p=0.512276
               

               
               872-986, + strand, RNAz p=0.737018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               727-842, - strand, RNAz p=0.512276
               

               
               872-986, + strand, RNAz p=0.737018

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               1-529, gnl|bosTau2|chr15 (39270226-39269689)
               

               
               1-529, gnl|Hg17|chr11 (34327517-34327037)
               

               
               1-529, gnl|Mm7|chr2 (103425775-103426459)
               


               
               653-1117, gnl|bosTau2|chr15 (39269242-39268786)
               

               
               653-1117, gnl|Hg17|chr11 (34326726-34326265)
               

               
               653-1117, gnl|Mm7|chr2 (103426920-103427368)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-529, gnl|bosTau2|chr15 (39270226-39269689)
               

               
               1-529, gnl|Hg17|chr11 (34327517-34327037)
               

               
               1-529, gnl|Mm7|chr2 (103425775-103426459)
               


               
               653-1117, gnl|bosTau2|chr15 (39269242-39268786)
               

               
               653-1117, gnl|Hg17|chr11 (34326726-34326265)
               

               
               653-1117, gnl|Mm7|chr2 (103426920-103427368)

	727-842, - strand, RNAz p=0.512276
	872-986, + strand, RNAz p=0.737018

	1-529, gnl\|bosTau2\|chr15 (39270226-39269689)
	1-529, gnl\|Hg17\|chr11 (34327517-34327037)
	1-529, gnl\|Mm7\|chr2 (103425775-103426459)

	653-1117, gnl\|bosTau2\|chr15 (39269242-39268786)
	653-1117, gnl\|Hg17\|chr11 (34326726-34326265)
	653-1117, gnl\|Mm7\|chr2 (103426920-103427368)