Non-Coding RNA Search

Ss1.1-Pig1-28A11.5

Sequence:


               
               GTCACAACTGAAGCATTTGCACTGGTGCGCTGGGCCACAAACCCCTCTCCTTGGAAATCT
GAGAGCTCAAAGCTGGCAGGACATGCTAGGGGTCAGTGTTTTAACCAATGTCTTCCTAGG
TAGGGTTAGATACTGTTACAAGAGGAAGAAAAGGAGCCCCATTGTGTGACAGTCCTTTGA
ATCTTCCCCTTTTCTGCCCTCCCTTTGGCTTTCCTTGGAAGCCTCCTTCATTGTTAAAGG
CCAAAGTTATCTCCATGCTGAAAGGTCATTCCTCTTTGTCCCTCAGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCACAACTGAAGCATTTGCACTGGTGCGCTGGGCCACAAACCCCTCTCCTTGGAAATCT
GAGAGCTCAAAGCTGGCAGGACATGCTAGGGGTCAGTGTTTTAACCAATGTCTTCCTAGG
TAGGGTTAGATACTGTTACAAGAGGAAGAAAAGGAGCCCCATTGTGTGACAGTCCTTTGA
ATCTTCCCCTTTTCTGCCCTCCCTTTGGCTTTCCTTGGAAGCCTCCTTCATTGTTAAAGG
CCAAAGTTATCTCCATGCTGAAAGGTCATTCCTCTTTGTCCCTCAGCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               196-288, - strand, RNAz p=0.765197

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               196-288, - strand, RNAz p=0.765197

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               9-288, gnl|bosTau2|chr13 (54478603-54478879)
               

               
               9-288, gnl|canFam2|chr24 (36149818-36150083)
               

               
               9-288, gnl|dasNov1|scaffold_82 (80336-80600)
               

               
               9-288, gnl|echTel1|scaffold_324580 (204810-204605)
               

               
               9-288, gnl|hg17|chr20 (43940664-43940933)
               

               
               9-288, gnl|Hg17|chr20 (43940693-43940973)
               

               
               9-288, gnl|mm7|chr2 (164562312-164562568)
               

               
               9-288, gnl|Mm7|chr2 (164562341-164562606)
               

               
               9-288, gnl|monDom2|scaffold_35 (25203947-25204282)
               

               
               9-288, gnl|oryCun1|scaffold_170464 (7348-7100)
               

               
               9-288, gnl|panTro1|chr21 (46462651-46462920)
               

               
               9-288, gnl|rheMac2|chr10 (18616486-18616217)
               

               
               9-288, gnl|rn3|chr3 (155760628-155760860)
               


               
               18-284, gnl|bosTau2|chr12 (26017893-26017628)

Aligned organism(s): 14 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-288, gnl|bosTau2|chr13 (54478603-54478879)
               

               
               9-288, gnl|canFam2|chr24 (36149818-36150083)
               

               
               9-288, gnl|dasNov1|scaffold_82 (80336-80600)
               

               
               9-288, gnl|echTel1|scaffold_324580 (204810-204605)
               

               
               9-288, gnl|hg17|chr20 (43940664-43940933)
               

               
               9-288, gnl|Hg17|chr20 (43940693-43940973)
               

               
               9-288, gnl|mm7|chr2 (164562312-164562568)
               

               
               9-288, gnl|Mm7|chr2 (164562341-164562606)
               

               
               9-288, gnl|monDom2|scaffold_35 (25203947-25204282)
               

               
               9-288, gnl|oryCun1|scaffold_170464 (7348-7100)
               

               
               9-288, gnl|panTro1|chr21 (46462651-46462920)
               

               
               9-288, gnl|rheMac2|chr10 (18616486-18616217)
               

               
               9-288, gnl|rn3|chr3 (155760628-155760860)
               


               
               18-284, gnl|bosTau2|chr12 (26017893-26017628)

	9-288, gnl\|bosTau2\|chr13 (54478603-54478879)
	9-288, gnl\|canFam2\|chr24 (36149818-36150083)
	9-288, gnl\|dasNov1\|scaffold_82 (80336-80600)
	9-288, gnl\|echTel1\|scaffold_324580 (204810-204605)
	9-288, gnl\|hg17\|chr20 (43940664-43940933)
	9-288, gnl\|Hg17\|chr20 (43940693-43940973)
	9-288, gnl\|mm7\|chr2 (164562312-164562568)
	9-288, gnl\|Mm7\|chr2 (164562341-164562606)
	9-288, gnl\|monDom2\|scaffold_35 (25203947-25204282)
	9-288, gnl\|oryCun1\|scaffold_170464 (7348-7100)
	9-288, gnl\|panTro1\|chr21 (46462651-46462920)
	9-288, gnl\|rheMac2\|chr10 (18616486-18616217)
	9-288, gnl\|rn3\|chr3 (155760628-155760860)

	18-284, gnl\|bosTau2\|chr12 (26017893-26017628)