Non-Coding RNA Search

Ss1.1-Pig1-28A13.5

Sequence:


               
               CTAAGCATACCGAAGCCGCTGGTGGATTTCTGCAATAAGCCCATTTTGCTGCATCAAGTG
GAGGCGCTGGCCTCGGCAGGCGTGGATCACGTGATTCTGGCCGTGAGCTATATGTCTCAG
ATGTTGGAGAAGGAAATGAAAGCACAGGAGCAAAGGCTAGGAATCCGAATCTCCATGTCC
CATGAAGAGGAGCCTTTGGGAACAGCTGGACCCCTGGCACTGGCCCGTGACCTGCTCTCT
GAGACTGCGGAGCCTTTTTTTGTTCTGAACAGTGATGTGATCTGCGATTTTCCCTTCCAA
GCCATGGTGCAGTTCCACCGCCACCATGGCCAAGAGGGCTCCATTCTGGTAAGGAAACAG
GTCTTTCTTCTCCGATAACCCACCCCACCCCAGCCTCTCTCACCTCCCAGCTTTGAATTG
CCCCAATGTTTTGGGTGCAGAACCATGCAGTATGTGCCTTTATGCATCTGGGGGCACAAT
CCCAGATATAAGACACCATGTACCTCAAGACTCAGGAGCCCTGGACTAGGTCTGAGGTCC
CCCTGCACTCAGGTGACCAAAGTGGAGGAGCCCTCTAAGTATGGTGTGGTGGTGTGTGAG
GCTGATACAGGCCGTATTCACCGGTTCGTGGAGAAGCCACAGGTGTTTGTGTCCAACAAG
ATCCATGCAGGCATGTACATCCTGAGCCCTGCAGTGCTGCAGCGCATCCAGGTGTGTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTAAGCATACCGAAGCCGCTGGTGGATTTCTGCAATAAGCCCATTTTGCTGCATCAAGTG
GAGGCGCTGGCCTCGGCAGGCGTGGATCACGTGATTCTGGCCGTGAGCTATATGTCTCAG
ATGTTGGAGAAGGAAATGAAAGCACAGGAGCAAAGGCTAGGAATCCGAATCTCCATGTCC
CATGAAGAGGAGCCTTTGGGAACAGCTGGACCCCTGGCACTGGCCCGTGACCTGCTCTCT
GAGACTGCGGAGCCTTTTTTTGTTCTGAACAGTGATGTGATCTGCGATTTTCCCTTCCAA
GCCATGGTGCAGTTCCACCGCCACCATGGCCAAGAGGGCTCCATTCTGGTAAGGAAACAG
GTCTTTCTTCTCCGATAACCCACCCCACCCCAGCCTCTCTCACCTCCCAGCTTTGAATTG
CCCCAATGTTTTGGGTGCAGAACCATGCAGTATGTGCCTTTATGCATCTGGGGGCACAAT
CCCAGATATAAGACACCATGTACCTCAAGACTCAGGAGCCCTGGACTAGGTCTGAGGTCC
CCCTGCACTCAGGTGACCAAAGTGGAGGAGCCCTCTAAGTATGGTGTGGTGGTGTGTGAG
GCTGATACAGGCCGTATTCACCGGTTCGTGGAGAAGCCACAGGTGTTTGTGTCCAACAAG
ATCCATGCAGGCATGTACATCCTGAGCCCTGCAGTGCTGCAGCGCATCCAGGTGTGTAGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|56755938|gb|AAW26147.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56755938|gb|AAW26147.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               242-396, - strand, RNAz p=0.999506

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-396, - strand, RNAz p=0.999506

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               203-720, gnl|bosTau2|chr22 (38095793-38095272)
               

               
               203-720, gnl|Hg17|chr3 (49735554-49735024)
               

               
               203-720, gnl|Mm7|chr9 (107781770-107782276)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               203-720, gnl|bosTau2|chr22 (38095793-38095272)
               

               
               203-720, gnl|Hg17|chr3 (49735554-49735024)
               

               
               203-720, gnl|Mm7|chr9 (107781770-107782276)

	203-720, gnl\|bosTau2\|chr22 (38095793-38095272)
	203-720, gnl\|Hg17\|chr3 (49735554-49735024)
	203-720, gnl\|Mm7\|chr9 (107781770-107782276)