Non-Coding RNA Search

Ss1.1-Pig1-28I08.5

Sequence:


               
               ATCTCCTTTGTCTTTTCTCTTTAAACTTGGACCAATTCCTGATGCAAATTAGTTCATATG
CAGAAAAATCTGACATTTCTAAAAATAATGCTTAGTTATATAGAGATCAAGCATTCAAAA
GATAATTCTTTCCTGAGCTCAAAAATGATTTTATTTTTACTGGGTGAAACAGTATAGATA
AGTTAACATTAAATTGCACCCTGTACCACGTTCACTCACTTCAGAAATATCAAAACATTT
TAAAAATACTGAATTTTGAATGGGTGGAGACTACTCTAAACATTGTGTGCAACACTCCAA
AAATATTATATTAAGCCTTATACATTTGAAGAGTGGTACATTTTGTATAAAAACCATATT
TTATACCATTAATTCTACATATGTACTTTTCATCTACTGCTTAACATTTTCTTTTTAGAG
CTCTAGCTCAAGGCTTTAAGTTGTATAGAGTAAGTCTTACTTATTTTTGAAAGTGTTTAG
TACCTTGTATTAAGCAACTCAAGACTGCATCCTCAAAAAAACAACTTTGCAGTATTGGGA
TTTACATTACACTGCCCTTCATTTTTTTAAGCCAAATAACTGAATTGATATTCATTGCTT
TTGTAGTGGTTAAAACCGAGAATTTCTTTAAAAAATGTGTTTGTAGTTTCTGTTTTTCAG
AGGGTTTTGGTAGTATTTGTGATAAAATGGTTTTGCATATTATTACAGGGGGTATATTTA
TAGAATTCTGCTTGTGTACCTTGTTGAATTATATTGAAAATTAAAAATTCTCAGCCCATA
CAGTTAATATTTGTATCTAGAGTGCTTCAGAAAAAAAATGTCTTCTATTTTTAGCATATA
GGAGCCAATGTTGCTTCTATTTGTTTTGAATACAAATTCCACTTTTTTTTTTGCATTTTA
CATCCTATGTTTAAGAAAAAACTTTACAAAATAATTTATATGATGGTAATATTTAGACAA
GTACTGTAAATTCGTGTATACTGTACTTTCTGAATATAGGTTTTCTCTAATCATAGCAAA
ATTTATTTCAAAACTATAGCTCTTTGAAGTGTTTGAATGTAATAAAATTTAGTTATAAAA
TGTGGCACCATTGAAAATTGAAAGGATAGTCTGAAGAAAGCAAGACAAATATTAATATTA
ATTTTTTGTATTTCCTAAATAAATATTTGGGTTTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTCCTTTGTCTTTTCTCTTTAAACTTGGACCAATTCCTGATGCAAATTAGTTCATATG
CAGAAAAATCTGACATTTCTAAAAATAATGCTTAGTTATATAGAGATCAAGCATTCAAAA
GATAATTCTTTCCTGAGCTCAAAAATGATTTTATTTTTACTGGGTGAAACAGTATAGATA
AGTTAACATTAAATTGCACCCTGTACCACGTTCACTCACTTCAGAAATATCAAAACATTT
TAAAAATACTGAATTTTGAATGGGTGGAGACTACTCTAAACATTGTGTGCAACACTCCAA
AAATATTATATTAAGCCTTATACATTTGAAGAGTGGTACATTTTGTATAAAAACCATATT
TTATACCATTAATTCTACATATGTACTTTTCATCTACTGCTTAACATTTTCTTTTTAGAG
CTCTAGCTCAAGGCTTTAAGTTGTATAGAGTAAGTCTTACTTATTTTTGAAAGTGTTTAG
TACCTTGTATTAAGCAACTCAAGACTGCATCCTCAAAAAAACAACTTTGCAGTATTGGGA
TTTACATTACACTGCCCTTCATTTTTTTAAGCCAAATAACTGAATTGATATTCATTGCTT
TTGTAGTGGTTAAAACCGAGAATTTCTTTAAAAAATGTGTTTGTAGTTTCTGTTTTTCAG
AGGGTTTTGGTAGTATTTGTGATAAAATGGTTTTGCATATTATTACAGGGGGTATATTTA
TAGAATTCTGCTTGTGTACCTTGTTGAATTATATTGAAAATTAAAAATTCTCAGCCCATA
CAGTTAATATTTGTATCTAGAGTGCTTCAGAAAAAAAATGTCTTCTATTTTTAGCATATA
GGAGCCAATGTTGCTTCTATTTGTTTTGAATACAAATTCCACTTTTTTTTTTGCATTTTA
CATCCTATGTTTAAGAAAAAACTTTACAAAATAATTTATATGATGGTAATATTTAGACAA
GTACTGTAAATTCGTGTATACTGTACTTTCTGAATATAGGTTTTCTCTAATCATAGCAAA
ATTTATTTCAAAACTATAGCTCTTTGAAGTGTTTGAATGTAATAAAATTTAGTTATAAAA
TGTGGCACCATTGAAAATTGAAAGGATAGTCTGAAGAAAGCAAGACAAATATTAATATTA
ATTTTTTGTATTTCCTAAATAAATATTTGGGTTTAC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               406-495, + strand, RNAz p=0.52072

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               406-495, + strand, RNAz p=0.52072

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1175, gnl|bosTau2|chr11 (30862361-30861202)
               

               
               2-1175, gnl|Hg17|chr6 (89864585-89863268)
               

               
               2-1175, gnl|Mm7|chr4 (33510133-33511733)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1175, gnl|bosTau2|chr11 (30862361-30861202)
               

               
               2-1175, gnl|Hg17|chr6 (89864585-89863268)
               

               
               2-1175, gnl|Mm7|chr4 (33510133-33511733)

	2-1175, gnl\|bosTau2\|chr11 (30862361-30861202)
	2-1175, gnl\|Hg17\|chr6 (89864585-89863268)
	2-1175, gnl\|Mm7\|chr4 (33510133-33511733)