Ss1.1-Pig1-30D07.5
|
GAAAAAACAAAAAATAATAACAATAAAATATCTTTTCTCTAGCCCAGCCCAGGAGTGACT
GGCCCCTCCCTCACTGGGCTGGGGGCAGAAGTGGGGAGTAGGGCTGAAAGGATGTGATAA
TGACCACTGCCCCCTTCCTGTTCCCTCCCTAGAACTCACGGTGCAGATCTCCCAGGAGAC
GACCGCAGATGCCATCGCCAGGAAGCTGAGGCCTTATGGAGCCCCAGGTTTGGTCCTGAC
ATGAGGAATGCAGAGAGGAGAGGGGACTGCCCTAGGGGCCCCCCACCTTCCCCTCTCCTG
GCTTCCTCCTGGGGTGGGTGATGATGGGATCAGAAAGGGATGAGAAGCCTGAGCAGCCTC
ATACCCCATCCCAATCCTGCAAGAGGGCTTAAAGATTTAGCTGGGAGAGATTTCCGGGGA
TGCCCCTGAGGCAGCAGGGGGCAGGCGCCCAGAACCTGCATCTAACCCCAGGTCACTGGA
GAGGAGAGTGGAGGGCANGGCGGGAGGTGGGGGGCATCCATTGTTGCTGGTAAGGTGCCC
TGTGTGGTTTCTACTGCTGTCTTCTTGGCCTTCATGATAAGCCCCTTGAGAGCAGGGTCA
TTACCCTTTGCAAAGAGCGAGACT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAAAAAACAAAAAATAATAACAATAAAATATCTTTTCTCTAGCCCAGCCCAGGAGTGACT
GGCCCCTCCCTCACTGGGCTGGGGGCAGAAGTGGGGAGTAGGGCTGAAAGGATGTGATAA
TGACCACTGCCCCCTTCCTGTTCCCTCCCTAGAACTCACGGTGCAGATCTCCCAGGAGAC
GACCGCAGATGCCATCGCCAGGAAGCTGAGGCCTTATGGAGCCCCAGGTTTGGTCCTGAC
ATGAGGAATGCAGAGAGGAGAGGGGACTGCCCTAGGGGCCCCCCACCTTCCCCTCTCCTG
GCTTCCTCCTGGGGTGGGTGATGATGGGATCAGAAAGGGATGAGAAGCCTGAGCAGCCTC
ATACCCCATCCCAATCCTGCAAGAGGGCTTAAAGATTTAGCTGGGAGAGATTTCCGGGGA
TGCCCCTGAGGCAGCAGGGGGCAGGCGCCCAGAACCTGCATCTAACCCCAGGTCACTGGA
GAGGAGAGTGGAGGGCANGGCGGGAGGTGGGGGGCATCCATTGTTGCTGGTAAGGTGCCC
TGTGTGGTTTCTACTGCTGTCTTCTTGGCCTTCATGATAAGCCCCTTGAGAGCAGGGTCA
TTACCCTTTGCAAAGAGCGAGACT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
227-334, + strand, RNAmicro p=0.971214 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
227-334, + strand, RNAmicro p=0.971214 |
|
87-624, gnl|bosTau2|chr2 (79389851-79390389) |
|
87-624, gnl|canFam2|chr2 (76097797-76097435) |
|
87-624, gnl|echTel1|scaffold_300068 (2880-2502) |
|
87-624, gnl|hg17|chr1 (26960832-26961276) |
|
87-624, gnl|Hg17|chr1 (26961455-26960951) |
|
87-624, gnl|loxAfr1|scaffold_50747 (12048-11610) |
|
87-624, gnl|mm7|chr4 (132908679-132908371) |
|
87-624, gnl|oryCun1|scaffold_206702 (497-904) |
|
87-624, gnl|panTro1|chr1_random (56878143-56878587) |
|
87-624, gnl|rheMac2|chr1 (29597041-29597478) |
|
87-624, gnl|rn3|chr5 (151562756-151563148) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
87-624, gnl|bosTau2|chr2 (79389851-79390389) |
|
87-624, gnl|canFam2|chr2 (76097797-76097435) |
|
87-624, gnl|echTel1|scaffold_300068 (2880-2502) |
|
87-624, gnl|hg17|chr1 (26960832-26961276) |
|
87-624, gnl|Hg17|chr1 (26961455-26960951) |
|
87-624, gnl|loxAfr1|scaffold_50747 (12048-11610) |
|
87-624, gnl|mm7|chr4 (132908679-132908371) |
|
87-624, gnl|oryCun1|scaffold_206702 (497-904) |
|
87-624, gnl|panTro1|chr1_random (56878143-56878587) |
|
87-624, gnl|rheMac2|chr1 (29597041-29597478) |
|
87-624, gnl|rn3|chr5 (151562756-151563148) |
