Non-Coding RNA Search

Ss1.1-Pig1-30K16.5

Sequence:


               
               GGAATGACAAGCCCCATCAACCCATACAAGGACCACATGTCTGTACTTAAAGCATATTAT
GCTATGAACATGGAGCCCAACTCTGATGAACTGCTGAAAATTTCCATTGCTGTGGGCCTT
CCTCAGGAATTTGTGAAGGAATGGTTTGAGCAACGAAAAGTCTACCAGTACTCAAATTCC
AGGTCACCATCACTGGAAAGGAACTCCAAACCGTTAGTTCCCAACAGTAACCCTCCCACA
AAAGACTCTTTATTACCCAGGTCTCCTGTAAAACCTATGGACTCTATCACATCACCTTCT
ATAGCGGAACTCCACAACAGTGTTACGAATTGTGACCCTCCTCTCAGGCTAACAAAACCT
TCCCACTTTACCAATATTAAACCAGTTGAAAAATTGGACCACTCAAGGAGTAATACTCCA
TCTCCTTTAAATCTTTCCTCCACATCTTCTAAAAACTCCCACAGTAGTTCTTACACTCCA
AACAGCTTCTCTTCCGAGGAGCTCCAGGCTGAGCCTTTGGACTTGTCATTACCAAAACAA
ATGAAAGAACCCAAAAGTATTATAGCCACAAAGAACAAAACAAAAGTTGGCAGCATAAAT
TTAGACCATAACAGTGTTTCTTCATCATCTGAAAACTCAGATGAACCTCTGAACTTGACT
TTTATCAAGAANNAGTTTTCAAATTCAAATAATCTGGACAACAAAAGCACTAACCCAGTN

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAATGACAAGCCCCATCAACCCATACAAGGACCACATGTCTGTACTTAAAGCATATTAT
GCTATGAACATGGAGCCCAACTCTGATGAACTGCTGAAAATTTCCATTGCTGTGGGCCTT
CCTCAGGAATTTGTGAAGGAATGGTTTGAGCAACGAAAAGTCTACCAGTACTCAAATTCC
AGGTCACCATCACTGGAAAGGAACTCCAAACCGTTAGTTCCCAACAGTAACCCTCCCACA
AAAGACTCTTTATTACCCAGGTCTCCTGTAAAACCTATGGACTCTATCACATCACCTTCT
ATAGCGGAACTCCACAACAGTGTTACGAATTGTGACCCTCCTCTCAGGCTAACAAAACCT
TCCCACTTTACCAATATTAAACCAGTTGAAAAATTGGACCACTCAAGGAGTAATACTCCA
TCTCCTTTAAATCTTTCCTCCACATCTTCTAAAAACTCCCACAGTAGTTCTTACACTCCA
AACAGCTTCTCTTCCGAGGAGCTCCAGGCTGAGCCTTTGGACTTGTCATTACCAAAACAA
ATGAAAGAACCCAAAAGTATTATAGCCACAAAGAACAAAACAAAAGTTGGCAGCATAAAT
TTAGACCATAACAGTGTTTCTTCATCATCTGAAAACTCAGATGAACCTCTGAACTTGACT
TTTATCAAGAANNAGTTTTCAAATTCAAATAATCTGGACAACAAAAGCACTAACCCAGTN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               81-200, - strand, RNAz p=0.668988
               

               
               401-719, - strand, RNAz p=0.970159

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               81-200, - strand, RNAz p=0.668988
               

               
               401-719, - strand, RNAz p=0.970159

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               84-223, - strand, RNAmicro p=0.991289

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               84-223, - strand, RNAmicro p=0.991289

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-719, gnl|bosTau2|chr2 (35510640-35509922)
               

               
               1-719, gnl|Hg17|chr2 (144990556-144989838)
               

               
               1-719, gnl|Mm7|chr2 (45004293-45003575)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-719, gnl|bosTau2|chr2 (35510640-35509922)
               

               
               1-719, gnl|Hg17|chr2 (144990556-144989838)
               

               
               1-719, gnl|Mm7|chr2 (45004293-45003575)

	81-200, - strand, RNAz p=0.668988
	401-719, - strand, RNAz p=0.970159

	1-719, gnl\|bosTau2\|chr2 (35510640-35509922)
	1-719, gnl\|Hg17\|chr2 (144990556-144989838)
	1-719, gnl\|Mm7\|chr2 (45004293-45003575)