Non-Coding RNA Search

Ss1.1-Pig1-30O08.5

Sequence:


               
               AGAAATGGCTTGGTTTCCCCGCCTTGGGAAGCCCTATGGTTGAAGGCTCCAGGTAATCTT
TCTCAGGTAAAGAGAATCCTTCCATATTCATCACAGAGCTGGGGCGTTGGTCTGTCCTTT
CAAAGCCCATGGCTTCCTGTTAGCCTAGTACCTCTGAGACCCATCCTGCTCCCTGAAGTC
AGCCAGCCCAGAGGGTAGGAGCCTCATCAAGAATCTGCCTTTGGCACCTTTGATGTCATT
GCCTGGTAACCATCATCTGTATTTTCACAGAAGCTCTGTAATCATTTGGTTTTGTCAGTT
GGAATAAGGGCTGAGTTTGCTAGCCCTGCAGATGCTGACACATTTGCCAGCCTCACTGAG
GATGTTGTGCTTTTTACTATCATAGTGAAACCTTCATGTTTTCACTGAGGGTGTGTCTTT
ATTAACCAAATAGCTTGGTGTTTCTAAACCAAGTGCACCGTTCCCGTGTATATTGTGAAG
CCTCCCCGCTCCCCCCTTTCAGGTCATTTTCCGCTATAAAAACTTGCTCTTCAAAAGCAG
GTTTTTTTTTTTTTCCCCCTCTGATTTAAATAAACTTGTTTGTTTCTAGAGATAAGTACT
TTTTTAAAAAAAATGCAAAATGCTGGGTATGCTCTAGTAGTTCTAACTGCATAAGCACTC
ATTTCCTCTCAGGATGTAAATAGCTAGCATGTTTCTTGGTGTGGAAACGGCATTTTTTAA
AATGCCCACGTAGGTGCATGCTCTCTGAGAAGGTAGTCGAAGGAGGCAGACCTTTGAACA
AGGCCTCTAGTTGCAGTTGTTGGGTAGCTCATTACATTTTTCTTTCTGACATTTACAAAA
ATAATGATTTTTCTCTGACTCAGTGATTTTTAAAAAAAAATTTCTCATTGCAGTAAAAGA
CATAGTGTCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAAATGGCTTGGTTTCCCCGCCTTGGGAAGCCCTATGGTTGAAGGCTCCAGGTAATCTT
TCTCAGGTAAAGAGAATCCTTCCATATTCATCACAGAGCTGGGGCGTTGGTCTGTCCTTT
CAAAGCCCATGGCTTCCTGTTAGCCTAGTACCTCTGAGACCCATCCTGCTCCCTGAAGTC
AGCCAGCCCAGAGGGTAGGAGCCTCATCAAGAATCTGCCTTTGGCACCTTTGATGTCATT
GCCTGGTAACCATCATCTGTATTTTCACAGAAGCTCTGTAATCATTTGGTTTTGTCAGTT
GGAATAAGGGCTGAGTTTGCTAGCCCTGCAGATGCTGACACATTTGCCAGCCTCACTGAG
GATGTTGTGCTTTTTACTATCATAGTGAAACCTTCATGTTTTCACTGAGGGTGTGTCTTT
ATTAACCAAATAGCTTGGTGTTTCTAAACCAAGTGCACCGTTCCCGTGTATATTGTGAAG
CCTCCCCGCTCCCCCCTTTCAGGTCATTTTCCGCTATAAAAACTTGCTCTTCAAAAGCAG
GTTTTTTTTTTTTTCCCCCTCTGATTTAAATAAACTTGTTTGTTTCTAGAGATAAGTACT
TTTTTAAAAAAAATGCAAAATGCTGGGTATGCTCTAGTAGTTCTAACTGCATAAGCACTC
ATTTCCTCTCAGGATGTAAATAGCTAGCATGTTTCTTGGTGTGGAAACGGCATTTTTTAA
AATGCCCACGTAGGTGCATGCTCTCTGAGAAGGTAGTCGAAGGAGGCAGACCTTTGAACA
AGGCCTCTAGTTGCAGTTGTTGGGTAGCTCATTACATTTTTCTTTCTGACATTTACAAAA
ATAATGATTTTTCTCTGACTCAGTGATTTTTAAAAAAAAATTTCTCATTGCAGTAAAAGA
CATAGTGTCAAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               489-607, - strand, RNAz p=0.910679

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               489-607, - strand, RNAz p=0.910679

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-902, gnl|bosTau2|chr7 (5630724-5629840)
               

               
               1-902, gnl|Hg17|chr19 (16370161-16369206)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-902, gnl|bosTau2|chr7 (5630724-5629840)
               

               
               1-902, gnl|Hg17|chr19 (16370161-16369206)

	1-902, gnl\|bosTau2\|chr7 (5630724-5629840)
	1-902, gnl\|Hg17\|chr19 (16370161-16369206)