Non-Coding RNA Search

Ss1.1-Pig1-32H22.5

Sequence:


               
               CCCACGCGTCCGGACCCCCAGTCCCCTTGGAGAACAGTCCTGTTCAGGCTCCAGCAGGGG
ATGTTGTATTAGAAGGAGGCACCAGCCAGGCTCTGGACAGTGACCGTAATCCCACCGTGA
AGGACCCTGAGAATGTGACCCCATGTTCTATCCCTGAATCATTGGCTGGTTGCCTGCAGG
ACAGACAGTTTGATGATGAATCAGGACTCAGTGCCTCGGGCCCACCCACCAGGGAAAGAG
CTGCTAGACAAGGAAACTTGAAAAGTGAGGCTCTCTTCTCCGCTGGTGCTGCTCCTCGGA
TGCCTGGCCTGTCAGATGACGGGTCAGTGAGACAGCCTGAACCCACCTCCAGAAAAGGTG
CCCCACCTCTTGAGCCCCAGGTGGGAGAAGAGCGGGACAAAGCTGCTCCCCTCGTTCCGG
TGTTGCCTGGGGCCTTGACAGCTGAGGAGGGGCTGGATCCCCTCGATGACTTGGCTTCCC
TCTGGGCAGTGCCATCTCAAGGGTGTGCTGACCGCGCTGGCAACAGGCAGCTAGAAGTTG
CAAAGCTGAGAATCAATGGAGACTCTGAAGCCCTGAGTCCTCACAGCGAGTCCACAGACA
CAGCCTCTGACTTTGAAGGCCACTTCTCTGAGGACAGCAGCGAGGCCGACCCTGGTGAAG
CCGCAGTGCAGGAGAGGTCCTCGGCGGCAGACCAGGCTGAGAAACATGATTGGAATGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCACGCGTCCGGACCCCCAGTCCCCTTGGAGAACAGTCCTGTTCAGGCTCCAGCAGGGG
ATGTTGTATTAGAAGGAGGCACCAGCCAGGCTCTGGACAGTGACCGTAATCCCACCGTGA
AGGACCCTGAGAATGTGACCCCATGTTCTATCCCTGAATCATTGGCTGGTTGCCTGCAGG
ACAGACAGTTTGATGATGAATCAGGACTCAGTGCCTCGGGCCCACCCACCAGGGAAAGAG
CTGCTAGACAAGGAAACTTGAAAAGTGAGGCTCTCTTCTCCGCTGGTGCTGCTCCTCGGA
TGCCTGGCCTGTCAGATGACGGGTCAGTGAGACAGCCTGAACCCACCTCCAGAAAAGGTG
CCCCACCTCTTGAGCCCCAGGTGGGAGAAGAGCGGGACAAAGCTGCTCCCCTCGTTCCGG
TGTTGCCTGGGGCCTTGACAGCTGAGGAGGGGCTGGATCCCCTCGATGACTTGGCTTCCC
TCTGGGCAGTGCCATCTCAAGGGTGTGCTGACCGCGCTGGCAACAGGCAGCTAGAAGTTG
CAAAGCTGAGAATCAATGGAGACTCTGAAGCCCTGAGTCCTCACAGCGAGTCCACAGACA
CAGCCTCTGACTTTGAAGGCCACTTCTCTGAGGACAGCAGCGAGGCCGACCCTGGTGAAG
CCGCAGTGCAGGAGAGGTCCTCGGCGGCAGACCAGGCTGAGAAACATGATTGGAATGGCT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               218-337, - strand, RNAz p=0.743411
               

               
               532-651, - strand, RNAz p=0.735084

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-337, - strand, RNAz p=0.743411
               

               
               532-651, - strand, RNAz p=0.735084

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               22-715, gnl|bosTau2|chr13 (42760396-42759700)
               

               
               22-715, gnl|Hg17|chr20 (30486596-30487289)
               

               
               22-715, gnl|Mm7|chr2 (153140775-153141423)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               22-715, gnl|bosTau2|chr13 (42760396-42759700)
               

               
               22-715, gnl|Hg17|chr20 (30486596-30487289)
               

               
               22-715, gnl|Mm7|chr2 (153140775-153141423)

	218-337, - strand, RNAz p=0.743411
	532-651, - strand, RNAz p=0.735084

	22-715, gnl\|bosTau2\|chr13 (42760396-42759700)
	22-715, gnl\|Hg17\|chr20 (30486596-30487289)
	22-715, gnl\|Mm7\|chr2 (153140775-153141423)