Ss1.1-Pig1-36A06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTCTAACTTCTTACCCATGACAGCACTTCAAGCAGCTGGTGGACGAGCTGATGGTCAAG GGCGTGGGGGTTGTGGACCGAGCTCTCAGTGAAGCCTTCCAGATCCTGCAGCAGTTCCAA GAGGTCAGGCGTGGGAGCCTGTGCAACCAGGCCATCATGCTGATCACCGACGGGGCCGTG GAGGACTATGAGCCGGTGTTCCAGAAATACAATTGGCCCGACCGCAAGGTCCGGGTCTTC ACTTATCTGATCGGGAGGGAAGTGAGTTTTGCTGACCGCCTGAAGTGGATTGCGTGCAAC AACAAAGGCTACTACACGCAAATCTCCACGCTGGCAGATGCCCAGGAGAACGTGATGGAG TACCTGCATGTGCTGAGCCGGCCCATGGTCATCAACCACGACCATGACGTCACCTGGACG GAAGCCTACATGGACAGCAAGGCACAGAGCCTGACGCTCCTCACCACGGTAGCCATGCCT GTCTTCAGCAAGAAAAACGAGACGCGATCCCACGGCATCCTCCTGGGTGTGGTGGGCTCC GACGTGGCCCTGAGGGAGTTGATGAAGCTGGCACCCCGGTACAAGCTCGGTGTGCACGGA TATGCCTTTCTGAACACGAACAATGGCTACATCCTCTCACATCCTGACCTCCGACCCCTG TACTGGGAGGGGAAGAAACTGAAGCCCAAACCCAACTACAACAGTGTGGACCTCTCGGAA GTGGAATGGGAAGACCAGGCCGGAACTCTGAGAACAGCCATGATCAACAGGGAGACAGGG TCTCTCTCCTGGACGTGAAGGTCCCGCTGGACAGAGGGAAGCGAGTTCTTTTCCTGACCA ATGACTACTTCTTCACAGACATCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTCTAACTTCTTACCCATGACAGCACTTCAAGCAGCTGGTGGACGAGCTGATGGTCAAG GGCGTGGGGGTTGTGGACCGAGCTCTCAGTGAAGCCTTCCAGATCCTGCAGCAGTTCCAA GAGGTCAGGCGTGGGAGCCTGTGCAACCAGGCCATCATGCTGATCACCGACGGGGCCGTG GAGGACTATGAGCCGGTGTTCCAGAAATACAATTGGCCCGACCGCAAGGTCCGGGTCTTC ACTTATCTGATCGGGAGGGAAGTGAGTTTTGCTGACCGCCTGAAGTGGATTGCGTGCAAC AACAAAGGCTACTACACGCAAATCTCCACGCTGGCAGATGCCCAGGAGAACGTGATGGAG TACCTGCATGTGCTGAGCCGGCCCATGGTCATCAACCACGACCATGACGTCACCTGGACG GAAGCCTACATGGACAGCAAGGCACAGAGCCTGACGCTCCTCACCACGGTAGCCATGCCT GTCTTCAGCAAGAAAAACGAGACGCGATCCCACGGCATCCTCCTGGGTGTGGTGGGCTCC GACGTGGCCCTGAGGGAGTTGATGAAGCTGGCACCCCGGTACAAGCTCGGTGTGCACGGA TATGCCTTTCTGAACACGAACAATGGCTACATCCTCTCACATCCTGACCTCCGACCCCTG TACTGGGAGGGGAAGAAACTGAAGCCCAAACCCAACTACAACAGTGTGGACCTCTCGGAA GTGGAATGGGAAGACCAGGCCGGAACTCTGAGAACAGCCATGATCAACAGGGAGACAGGG TCTCTCTCCTGGACGTGAAGGTCCCGCTGGACAGAGGGAAGCGAGTTCTTTTCCTGACCA ATGACTACTTCTTCACAGACATCA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 643-752, - strand, RNAz p=0.86478 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 643-752, - strand, RNAz p=0.86478 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 112-230, gnl|bosTau2|chr5 (65665852-65665734) | |
| 112-230, gnl|canFam2|chr27 (46963118-46963273) | |
| 112-230, gnl|danRer3|chr4 (30669112-30668992) | |
| 112-230, gnl|dasNov1|scaffold_1874 (2079-1950) | |
| 112-230, gnl|echTel1|scaffold_301379 (7701-7545) | |
| 112-230, gnl|fr1|chrUn (146325973-146325851) | |
| 112-230, gnl|galGal2|chr1 (57717469-57717622) | |
| 112-230, gnl|hg17|chr12 (1864192-1864348) | |
| 112-230, gnl|Hg17|chr12 (1864311-1864193) | |
| 112-230, gnl|loxAfr1|scaffold_3032 (64177-64329) | |
| 112-230, gnl|mm7|chr6 (119296668-119296520) | |
| 112-230, gnl|Mm7|chr6 (119296548-119296666) | |
| 112-230, gnl|monDom2|scaffold_31 (25874035-25874196) | |
| 112-230, gnl|oryCun1|scaffold_200262 (139162-139291) | |
| 112-230, gnl|panTro1|chr10 (1921128-1921284) | |
| 112-230, gnl|rheMac2|chr11 (1962122-1962278) | |
| 112-230, gnl|rn3|chr4 (155824731-155824583) | |
| 112-230, gnl|tetNig1|chr19 (3158543-3158421) | |
| 112-230, gnl|xenTro1|scaffold_286 (688521-688369) | |
| 306-439, gnl|bosTau2|chr22 (35216466-35216599) | |
| 306-439, gnl|canFam2|chr20 (38371500-38371352) | |
| 306-439, gnl|danRer3|chr11 (38836470-38836616) | |
| 306-439, gnl|dasNov1|scaffold_63827 (1972-1820) | |
| 306-439, gnl|echTel1|scaffold_186264 (3639-3791) | |
| 306-439, gnl|fr1|chrUn (163732124-163732274) | |
| 306-439, gnl|galGal2|chr12 (7650960-7651110) | |
| 306-439, gnl|hg17|chr3 (54773279-54773431) | |
| 306-439, gnl|Hg17|chr3 (54773283-54773416) | |
| 306-439, gnl|mm7|chr14 (26599662-26599510) | |
| 306-439, gnl|Mm7|chr14 (26599656-26599523) | |
| 306-439, gnl|monDom2|scaffold_76 (2900649-2900497) | |
| 306-439, gnl|oryCun1|scaffold_213945 (47086-47238) | |
| 306-439, gnl|panTro1|chr2 (56417947-56418099) | |
| 306-439, gnl|rheMac2|chr2 (81581382-81581230) | |
| 306-439, gnl|rn3|chr16 (4477453-4477301) | |
| 306-439, gnl|tetNig1|chr9 (4954528-4954680) | |
| 306-439, gnl|xenTro1|scaffold_286 (688849-689000) | |
| 643-752, gnl|bosTau2|chr5 (65660879-65660770) | |
| 643-752, gnl|canFam2|chr27 (46953958-46954080) | |
| 643-752, gnl|danRer3|chr4 (30675165-30675069) | |
| 643-752, gnl|dasNov1|scaffold_21611 (13922-13801) | |
| 643-752, gnl|echTel1|scaffold_321375 (1629-1507) | |
| 643-752, gnl|fr1|chrUn (146328105-146328007) | |
| 643-752, gnl|galGal2|chr1 (57706580-57706679) | |
| 643-752, gnl|hg17|chr12 (1854670-1854792) | |
| 643-752, gnl|Hg17|chr12 (1854783-1854673) | |
| 643-752, gnl|loxAfr1|scaffold_5657 (59356-59241) | |
| 643-752, gnl|mm7|chr6 (119306858-119306736) | |
| 643-752, gnl|Mm7|chr6 (119306743-119306853) | |
| 643-752, gnl|monDom2|scaffold_31 (25862926-25863048) | |
| 643-752, gnl|oryCun1|scaffold_213945 (53926-53804) | |
| 643-752, gnl|panTro1|chr10 (1911609-1911731) | |
| 643-752, gnl|rheMac2|chr11 (1951935-1952057) | |
| 643-752, gnl|rn3|chr4 (155834445-155834322) | |
| 643-752, gnl|tetNig1|chr19 (3160564-3160489) | |
| 643-752, gnl|xenTro1|scaffold_286 (694293-694174) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 112-230, gnl|bosTau2|chr5 (65665852-65665734) | |
| 112-230, gnl|canFam2|chr27 (46963118-46963273) | |
| 112-230, gnl|danRer3|chr4 (30669112-30668992) | |
| 112-230, gnl|dasNov1|scaffold_1874 (2079-1950) | |
| 112-230, gnl|echTel1|scaffold_301379 (7701-7545) | |
| 112-230, gnl|fr1|chrUn (146325973-146325851) | |
| 112-230, gnl|galGal2|chr1 (57717469-57717622) | |
| 112-230, gnl|hg17|chr12 (1864192-1864348) | |
| 112-230, gnl|Hg17|chr12 (1864311-1864193) | |
| 112-230, gnl|loxAfr1|scaffold_3032 (64177-64329) | |
| 112-230, gnl|mm7|chr6 (119296668-119296520) | |
| 112-230, gnl|Mm7|chr6 (119296548-119296666) | |
| 112-230, gnl|monDom2|scaffold_31 (25874035-25874196) | |
| 112-230, gnl|oryCun1|scaffold_200262 (139162-139291) | |
| 112-230, gnl|panTro1|chr10 (1921128-1921284) | |
| 112-230, gnl|rheMac2|chr11 (1962122-1962278) | |
| 112-230, gnl|rn3|chr4 (155824731-155824583) | |
| 112-230, gnl|tetNig1|chr19 (3158543-3158421) | |
| 112-230, gnl|xenTro1|scaffold_286 (688521-688369) | |
| 306-439, gnl|bosTau2|chr22 (35216466-35216599) | |
| 306-439, gnl|canFam2|chr20 (38371500-38371352) | |
| 306-439, gnl|danRer3|chr11 (38836470-38836616) | |
| 306-439, gnl|dasNov1|scaffold_63827 (1972-1820) | |
| 306-439, gnl|echTel1|scaffold_186264 (3639-3791) | |
| 306-439, gnl|fr1|chrUn (163732124-163732274) | |
| 306-439, gnl|galGal2|chr12 (7650960-7651110) | |
| 306-439, gnl|hg17|chr3 (54773279-54773431) | |
| 306-439, gnl|Hg17|chr3 (54773283-54773416) | |
| 306-439, gnl|mm7|chr14 (26599662-26599510) | |
| 306-439, gnl|Mm7|chr14 (26599656-26599523) | |
| 306-439, gnl|monDom2|scaffold_76 (2900649-2900497) | |
| 306-439, gnl|oryCun1|scaffold_213945 (47086-47238) | |
| 306-439, gnl|panTro1|chr2 (56417947-56418099) | |
| 306-439, gnl|rheMac2|chr2 (81581382-81581230) | |
| 306-439, gnl|rn3|chr16 (4477453-4477301) | |
| 306-439, gnl|tetNig1|chr9 (4954528-4954680) | |
| 306-439, gnl|xenTro1|scaffold_286 (688849-689000) | |
| 643-752, gnl|bosTau2|chr5 (65660879-65660770) | |
| 643-752, gnl|canFam2|chr27 (46953958-46954080) | |
| 643-752, gnl|danRer3|chr4 (30675165-30675069) | |
| 643-752, gnl|dasNov1|scaffold_21611 (13922-13801) | |
| 643-752, gnl|echTel1|scaffold_321375 (1629-1507) | |
| 643-752, gnl|fr1|chrUn (146328105-146328007) | |
| 643-752, gnl|galGal2|chr1 (57706580-57706679) | |
| 643-752, gnl|hg17|chr12 (1854670-1854792) | |
| 643-752, gnl|Hg17|chr12 (1854783-1854673) | |
| 643-752, gnl|loxAfr1|scaffold_5657 (59356-59241) | |
| 643-752, gnl|mm7|chr6 (119306858-119306736) | |
| 643-752, gnl|Mm7|chr6 (119306743-119306853) | |
| 643-752, gnl|monDom2|scaffold_31 (25862926-25863048) | |
| 643-752, gnl|oryCun1|scaffold_213945 (53926-53804) | |
| 643-752, gnl|panTro1|chr10 (1911609-1911731) | |
| 643-752, gnl|rheMac2|chr11 (1951935-1952057) | |
| 643-752, gnl|rn3|chr4 (155834445-155834322) | |
| 643-752, gnl|tetNig1|chr19 (3160564-3160489) | |
| 643-752, gnl|xenTro1|scaffold_286 (694293-694174) |