Ss1.1-Pig1-39J18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTCACCCCACAGCCCGCTGTTGAAGTTGGCCCTGGCCCCGCCCTCTCCATCCCCCCTGC GGGGCTCACCTGTGCCCCCCTTCCCTGGCCGGCAGAGCTGGACCTGCAGCGATCCCTGAG CTTGCAGGCACCGCCAGTGAAAGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGG CCCTCTTATGTCCTCCTTCAAGAAGCTCCACTTCTCCCTCACCACGGAGGCCCTCAGCTT TGCCAAGACACCCAGCTCCAAGAAAAGCACTCTCATCAAGCTCTCCAGCATCCGGGCAGT GGAAAAGGTGGAGGAGAAGAGTTTTGGCAGCTCCCACGTCCTGCAGGTCCTGTACACGGA CGACTCGGGCCGGCTGCAGACCGCCTACCTGCAGGGCAAGTGTGTAAACGAGCTGAACCA GTGGCTGTCTGCCCTGCGCAAGGTCAGCATCCACAACACCGGCCTGCTGGGCTCCTACCA CCCTGGCATCTTCCGTGGAGACAAGTGGAGCTGCTGCCACCAGAGGGACAAGACAGATCT AGGCTGTGATAAGACACGGCCCCGGGTGACCCTGCAGGAGTGGAATGACCCTCTGGACCA CGACCTGGAGGCCCAGCTCATCTACCGGCACCTGCTGGGTGTGGAGGCCGAGCTATGGGA GAAGCACCGGCAGCTGCTGGCGGGGCCAGGAGCAGGTCCTATGCCCACGGGCCCTGGCGA AGCCCCCCAAGACCCACTGGCCCAGCTGCTCCAGGTGCTGCAGGATCTCAAGGAGGCCCA TAGATCCAGTCCAGCAGGCTCCCCATCCTCGGAGCCCAGCCACCTCCTGGAGCTGCAGAC GTGAGGCTGACCTACGCCCCCACCGCTGCCGAACCCCACCAGGTGCTGGGAGACCCCCGT GCACACCCCGCTTTTCACCTCAGTCCCTCTTGGAGTGCGGGGCTTGGGTCTGTCCTGGGC CGGGGGACCAGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTCACCCCACAGCCCGCTGTTGAAGTTGGCCCTGGCCCCGCCCTCTCCATCCCCCCTGC GGGGCTCACCTGTGCCCCCCTTCCCTGGCCGGCAGAGCTGGACCTGCAGCGATCCCTGAG CTTGCAGGCACCGCCAGTGAAAGAGGGGCCACTCTTCATCCACAGGACCAAGGGCAAGGG CCCTCTTATGTCCTCCTTCAAGAAGCTCCACTTCTCCCTCACCACGGAGGCCCTCAGCTT TGCCAAGACACCCAGCTCCAAGAAAAGCACTCTCATCAAGCTCTCCAGCATCCGGGCAGT GGAAAAGGTGGAGGAGAAGAGTTTTGGCAGCTCCCACGTCCTGCAGGTCCTGTACACGGA CGACTCGGGCCGGCTGCAGACCGCCTACCTGCAGGGCAAGTGTGTAAACGAGCTGAACCA GTGGCTGTCTGCCCTGCGCAAGGTCAGCATCCACAACACCGGCCTGCTGGGCTCCTACCA CCCTGGCATCTTCCGTGGAGACAAGTGGAGCTGCTGCCACCAGAGGGACAAGACAGATCT AGGCTGTGATAAGACACGGCCCCGGGTGACCCTGCAGGAGTGGAATGACCCTCTGGACCA CGACCTGGAGGCCCAGCTCATCTACCGGCACCTGCTGGGTGTGGAGGCCGAGCTATGGGA GAAGCACCGGCAGCTGCTGGCGGGGCCAGGAGCAGGTCCTATGCCCACGGGCCCTGGCGA AGCCCCCCAAGACCCACTGGCCCAGCTGCTCCAGGTGCTGCAGGATCTCAAGGAGGCCCA TAGATCCAGTCCAGCAGGCTCCCCATCCTCGGAGCCCAGCCACCTCCTGGAGCTGCAGAC GTGAGGCTGACCTACGCCCCCACCGCTGCCGAACCCCACCAGGTGCTGGGAGACCCCCGT GCACACCCCGCTTTTCACCTCAGTCCCTCTTGGAGTGCGGGGCTTGGGTCTGTCCTGGGC CGGGGGACCAGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 138-254, - strand, RNAz p=0.888154 | |
| 864-967, + strand, RNAz p=0.807679 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 138-254, - strand, RNAz p=0.888154 | |
| 864-967, + strand, RNAz p=0.807679 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 7-262, gnl|bosTau2|chr25 (31125567-31125309) | |
| 7-262, gnl|canFam2|chr6 (10699665-10699478) | |
| 7-262, gnl|danRer3|chr5 (66921401-66921583) | |
| 7-262, gnl|dasNov1|scaffold_39579 (3805-3995) | |
| 7-262, gnl|echTel1|scaffold_142762 (540-350) | |
| 7-262, gnl|fr1|chrUn (48492955-48493131) | |
| 7-262, gnl|galGal2|chr15 (11035365-11035548) | |
| 7-262, gnl|hg17|chr7 (43851629-43851819) | |
| 7-262, gnl|Hg17|chr7 (101727885-101727283) | |
| 7-262, gnl|loxAfr1|scaffold_3650 (171174-171364) | |
| 7-262, gnl|mm7|chr5 (135075305-135075115) | |
| 7-262, gnl|Mm7|chr5 (135074909-135075286) | |
| 7-262, gnl|monDom2|scaffold_77 (4466560-4466747) | |
| 7-262, gnl|oryCun1|scaffold_113317 (7717-7550) | |
| 7-262, gnl|panTro1|chr6_random (31104255-31104065) | |
| 7-262, gnl|rheMac2|chr3 (49766299-49766489) | |
| 7-262, gnl|rn3|chr12 (21666560-21666750) | |
| 7-262, gnl|tetNig1|chrUn_random (34338882-34339057) | |
| 7-262, gnl|xenTro1|scaffold_38 (38557-38731) | |
| 399-536, gnl|bosTau2|chr25 (31123498-31123361) | |
| 399-536, gnl|Hg17|chr7 (101722767-101722630) | |
| 399-536, gnl|Mm7|chr5 (135076882-135077019) | |
| 404-523, gnl|bosTau2|chr17 (37901051-37901170) | |
| 404-523, gnl|Hg17|chr12 (112004603-112004484) | |
| 404-523, gnl|Mm7|chr5 (119909595-119909714) | |
| 721-967, gnl|bosTau2|chr25 (31119651-31119407) | |
| 721-967, gnl|Hg17|chr7 (101717882-101717622) | |
| 721-967, gnl|Mm7|chr5 (135082709-135082927) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 7-262, gnl|bosTau2|chr25 (31125567-31125309) | |
| 7-262, gnl|canFam2|chr6 (10699665-10699478) | |
| 7-262, gnl|danRer3|chr5 (66921401-66921583) | |
| 7-262, gnl|dasNov1|scaffold_39579 (3805-3995) | |
| 7-262, gnl|echTel1|scaffold_142762 (540-350) | |
| 7-262, gnl|fr1|chrUn (48492955-48493131) | |
| 7-262, gnl|galGal2|chr15 (11035365-11035548) | |
| 7-262, gnl|hg17|chr7 (43851629-43851819) | |
| 7-262, gnl|Hg17|chr7 (101727885-101727283) | |
| 7-262, gnl|loxAfr1|scaffold_3650 (171174-171364) | |
| 7-262, gnl|mm7|chr5 (135075305-135075115) | |
| 7-262, gnl|Mm7|chr5 (135074909-135075286) | |
| 7-262, gnl|monDom2|scaffold_77 (4466560-4466747) | |
| 7-262, gnl|oryCun1|scaffold_113317 (7717-7550) | |
| 7-262, gnl|panTro1|chr6_random (31104255-31104065) | |
| 7-262, gnl|rheMac2|chr3 (49766299-49766489) | |
| 7-262, gnl|rn3|chr12 (21666560-21666750) | |
| 7-262, gnl|tetNig1|chrUn_random (34338882-34339057) | |
| 7-262, gnl|xenTro1|scaffold_38 (38557-38731) | |
| 399-536, gnl|bosTau2|chr25 (31123498-31123361) | |
| 399-536, gnl|Hg17|chr7 (101722767-101722630) | |
| 399-536, gnl|Mm7|chr5 (135076882-135077019) | |
| 404-523, gnl|bosTau2|chr17 (37901051-37901170) | |
| 404-523, gnl|Hg17|chr12 (112004603-112004484) | |
| 404-523, gnl|Mm7|chr5 (119909595-119909714) | |
| 721-967, gnl|bosTau2|chr25 (31119651-31119407) | |
| 721-967, gnl|Hg17|chr7 (101717882-101717622) | |
| 721-967, gnl|Mm7|chr5 (135082709-135082927) |