Ss1.1-Pig1-39K03.5
|
GTCTGTCCTGTCCCATCAGTCCCGTCCTGTTCCATCCCGGCCGCGGGACTCAGAGATGCC
GTCGCCAACGCCTCCATCAGGCACAACAGATGGTGCTCGTTCAGACGTGGGCCGCTGGGG
TGGGAACCCCTGGCAGCCCCCCACCACACCTTCTCCGGAGCCGGAGCCAGAGCCAGACAG
ACGTTCTCGCCGAGATGGCCGTTCCTTCTGGGCTCGCTGCTGTGGCTGCTGCTCATGCAG
GAATACAGATGATGACTGGGGACCTCGTGGAGACCGAGGGGCTGGCTCCAGGGATCGAGG
GTCCGGCTCTGGGAGTCGAAGACCCGACTCCCGGGGCTCAGACTCCCGTCGGCCTGGTTC
CCGGGGCAGCGGCGTGAACGCAGCTGGAGATGGCACCATCCGAGAGGGCATGCTGGTGGT
GAAGGGTGTGGATCTGCTGAGTTCCCGCTCGGATCAGAACCGCCGAGAGCACCATACAGA
TGAGTTTGAGTACGATGAGCTGATTATCCGCCGTGGTCAGCCTTTCTACATGGTCCTCCT
CCTGTCTCGGCCCTACGAATCCTC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
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GTCTGTCCTGTCCCATCAGTCCCGTCCTGTTCCATCCCGGCCGCGGGACTCAGAGATGCC
GTCGCCAACGCCTCCATCAGGCACAACAGATGGTGCTCGTTCAGACGTGGGCCGCTGGGG
TGGGAACCCCTGGCAGCCCCCCACCACACCTTCTCCGGAGCCGGAGCCAGAGCCAGACAG
ACGTTCTCGCCGAGATGGCCGTTCCTTCTGGGCTCGCTGCTGTGGCTGCTGCTCATGCAG
GAATACAGATGATGACTGGGGACCTCGTGGAGACCGAGGGGCTGGCTCCAGGGATCGAGG
GTCCGGCTCTGGGAGTCGAAGACCCGACTCCCGGGGCTCAGACTCCCGTCGGCCTGGTTC
CCGGGGCAGCGGCGTGAACGCAGCTGGAGATGGCACCATCCGAGAGGGCATGCTGGTGGT
GAAGGGTGTGGATCTGCTGAGTTCCCGCTCGGATCAGAACCGCCGAGAGCACCATACAGA
TGAGTTTGAGTACGATGAGCTGATTATCCGCCGTGGTCAGCCTTTCTACATGGTCCTCCT
CCTGTCTCGGCCCTACGAATCCTC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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91-365, gnl|bosTau2|chr10 (12233809-12234080) |
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91-365, gnl|canFam2|chr8 (7247076-7247667) |
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91-365, gnl|dasNov1|scaffold_61427 (13310-13946) |
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91-365, gnl|hg17|chr14 (23801077-23801643) |
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91-365, gnl|Hg17|chr14 (23801390-23801134) |
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91-365, gnl|mm7|chr14 (50579784-50580356) |
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91-365, gnl|Mm7|chr14 (50580097-50579852) |
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91-365, gnl|monDom2|scaffold_12 (25467250-25466703) |
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91-365, gnl|oryCun1|scaffold_178102 (145476-146096) |
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91-365, gnl|panTro1|chr15 (22703907-22704476) |
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91-365, gnl|rheMac2|chr7 (87157293-87157860) |
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91-365, gnl|rn3|chr15 (33874271-33874871) |
| |
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382-564, gnl|bosTau2|chr10 (12234319-12234500) |
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382-564, gnl|Hg17|chr14 (23800951-23800770) |
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382-564, gnl|Mm7|chr14 (50579664-50579483) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
91-365, gnl|bosTau2|chr10 (12233809-12234080) |
|
91-365, gnl|canFam2|chr8 (7247076-7247667) |
|
91-365, gnl|dasNov1|scaffold_61427 (13310-13946) |
|
91-365, gnl|hg17|chr14 (23801077-23801643) |
|
91-365, gnl|Hg17|chr14 (23801390-23801134) |
|
91-365, gnl|mm7|chr14 (50579784-50580356) |
|
91-365, gnl|Mm7|chr14 (50580097-50579852) |
|
91-365, gnl|monDom2|scaffold_12 (25467250-25466703) |
|
91-365, gnl|oryCun1|scaffold_178102 (145476-146096) |
|
91-365, gnl|panTro1|chr15 (22703907-22704476) |
|
91-365, gnl|rheMac2|chr7 (87157293-87157860) |
|
91-365, gnl|rn3|chr15 (33874271-33874871) |
| |
|
382-564, gnl|bosTau2|chr10 (12234319-12234500) |
|
382-564, gnl|Hg17|chr14 (23800951-23800770) |
|
382-564, gnl|Mm7|chr14 (50579664-50579483) |
