Non-Coding RNA Search

Ss1.1-Pig1-3B21.5

Sequence:


               
               GGTCGTCCACCCCTCCCACCCCCTGATGACCCTGCCACTCTGGGGCCTCGCTTGGGCCTC
CGTGGTGTACCCCAGAGCACGGCAGCCAGCTCATGACCCTGCCCCCTCCCTGGGGCCCCT
CCTGAAGCCATACCCCCCATCTGGGGGCCCTGGGCTCCCATCCTCATCTTTCCCCTTGAC
TGGAATTGCTGCTACCCAGCCGGGGTGGGTGAGGCCTGCACTGATTGGGGCCTGGGGCAG
GGGGTCAAGGAGAAGGGTTCAGGTGCACCCTCCCCACTAAGGACTGGACCCTTGGCCCCC
TCTCCCCCTGTGTTTTCTATTTATTGTACCAAAGACAGTGGTGGTCCAGCGGGAGGGGGA
GAGTCCCCTCACCCCAGGGCCCTAGGAGGGGGTGGGGGCAGGTAGGGGGGAGATGGCCTT
GCTCCTCCTCGCTGTACCCCCCAGTAAAGAGCTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTCGTCCACCCCTCCCACCCCCTGATGACCCTGCCACTCTGGGGCCTCGCTTGGGCCTC
CGTGGTGTACCCCAGAGCACGGCAGCCAGCTCATGACCCTGCCCCCTCCCTGGGGCCCCT
CCTGAAGCCATACCCCCCATCTGGGGGCCCTGGGCTCCCATCCTCATCTTTCCCCTTGAC
TGGAATTGCTGCTACCCAGCCGGGGTGGGTGAGGCCTGCACTGATTGGGGCCTGGGGCAG
GGGGTCAAGGAGAAGGGTTCAGGTGCACCCTCCCCACTAAGGACTGGACCCTTGGCCCCC
TCTCCCCCTGTGTTTTCTATTTATTGTACCAAAGACAGTGGTGGTCCAGCGGGAGGGGGA
GAGTCCCCTCACCCCAGGGCCCTAGGAGGGGGTGGGGGCAGGTAGGGGGGAGATGGCCTT
GCTCCTCCTCGCTGTACCCCCCAGTAAAGAGCTTTC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-454, - strand, RNAz p=0.993644

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-454, - strand, RNAz p=0.993644

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               169-262, + strand, RNAmicro p=0.932792

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               169-262, + strand, RNAmicro p=0.932792

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               160-454, DB807450 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807450.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               160-454, DG11-65k12 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO693621.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-454, DG32-147o8 DG32-liver Canis familiaris cDNA 3', mRNA sequence 
(gb|CO698862.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-347, DG14-107d17 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708393.1|), blast E-value=0, identity=94.71% 
               

               
               160-454, DG14-111k24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708567.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-454, DG14-16a3 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO711484.1|), blast E-value=0.000000000008, identity=97.73%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               160-454, DB807450 full-length enriched swine cDNA library, adult lung Sus 
(dbj|DB807450.1|), blast E-value=0.00000000000003, identity=100% 
               

               
               160-454, DG11-65k12 DG11-kidney Canis familiaris cDNA 3', mRNA sequence 
(gb|CO693621.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-454, DG32-147o8 DG32-liver Canis familiaris cDNA 3', mRNA sequence 
(gb|CO698862.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-347, DG14-107d17 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708393.1|), blast E-value=0, identity=94.71% 
               

               
               160-454, DG14-111k24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO708567.1|), blast E-value=0.000000000008, identity=97.73% 
               

               
               160-454, DG14-16a3 DG14-muscle Canis familiaris cDNA 3', mRNA sequence 
(gb|CO711484.1|), blast E-value=0.000000000008, identity=97.73%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-454, gnl|bosTau2|chr18 (46901062-46900611)
               

               
               1-454, gnl|Hg17|chr19 (45008290-45007836)
               

               
               1-454, gnl|Mm7|chr7 (25120726-25121186)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-454, gnl|bosTau2|chr18 (46901062-46900611)
               

               
               1-454, gnl|Hg17|chr19 (45008290-45007836)
               

               
               1-454, gnl|Mm7|chr7 (25120726-25121186)

	160-454, DB807450 full-length enriched swine cDNA library, adult lung Sus (dbj\|DB807450.1\|), blast E-value=0.00000000000003, identity=100%
	160-454, DG11-65k12 DG11-kidney Canis familiaris cDNA 3', mRNA sequence (gb\|CO693621.1\|), blast E-value=0.000000000008, identity=97.73%
	160-454, DG32-147o8 DG32-liver Canis familiaris cDNA 3', mRNA sequence (gb\|CO698862.1\|), blast E-value=0.000000000008, identity=97.73%
	160-347, DG14-107d17 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO708393.1\|), blast E-value=0, identity=94.71%
	160-454, DG14-111k24 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO708567.1\|), blast E-value=0.000000000008, identity=97.73%
	160-454, DG14-16a3 DG14-muscle Canis familiaris cDNA 3', mRNA sequence (gb\|CO711484.1\|), blast E-value=0.000000000008, identity=97.73%

	1-454, gnl\|bosTau2\|chr18 (46901062-46900611)
	1-454, gnl\|Hg17\|chr19 (45008290-45007836)
	1-454, gnl\|Mm7\|chr7 (25120726-25121186)