Non-Coding RNA Search

Ss1.1-Pig1-3H13.5

Sequence:


               
               AAGAGCTGCACCGGTGGAAGCTGAGCGTTCTGGAATCCTCCCCTTCAGGGGAGGATGAAG
AGCTGGTCCCTGCGGACTCAGCCCTGCTCAAGAGGGGGTTCACCGTTCTCTCCTATTTAC
CCAGGGCCGTGAGGGAGGCAGAGGAGGGGGCCTCAGCCTCTAGGCCACAGTCCTGGCCCC
TGGGGTGGGATCCCATTGGCGGCGGCGGCAGCAGCGGCGGCGGGCTCTGGGGGCCTGGGG
AGGGCCTGGCTGTCGTGGGAGCCTCTGCCCTGGGGGAGCTGCCACGCTTCCAGCCCCTCG
GCCCAGGGCCCCAGAACTGAGGGACCGAGGCCCCGGGTGGTCACCATTGTCCTGGCTTCC
CCAGGACACTGGAGGCTGGGCAGGCCTGGCCGCCGCCTCGCCGCAACAACCGGGGTGGCA
CCTGGCGAGGGATGGGGCCTTGGGCCTGTGGGGGAAGAATGGTGAGTGGTCTGGGCGCTG
AGAAATGGGACCCGCCACAGCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGAGCTGCACCGGTGGAAGCTGAGCGTTCTGGAATCCTCCCCTTCAGGGGAGGATGAAG
AGCTGGTCCCTGCGGACTCAGCCCTGCTCAAGAGGGGGTTCACCGTTCTCTCCTATTTAC
CCAGGGCCGTGAGGGAGGCAGAGGAGGGGGCCTCAGCCTCTAGGCCACAGTCCTGGCCCC
TGGGGTGGGATCCCATTGGCGGCGGCGGCAGCAGCGGCGGCGGGCTCTGGGGGCCTGGGG
AGGGCCTGGCTGTCGTGGGAGCCTCTGCCCTGGGGGAGCTGCCACGCTTCCAGCCCCTCG
GCCCAGGGCCCCAGAACTGAGGGACCGAGGCCCCGGGTGGTCACCATTGTCCTGGCTTCC
CCAGGACACTGGAGGCTGGGCAGGCCTGGCCGCCGCCTCGCCGCAACAACCGGGGTGGCA
CCTGGCGAGGGATGGGGCCTTGGGCCTGTGGGGGAAGAATGGTGAGTGGTCTGGGCGCTG
AGAAATGGGACCCGCCACAGCATC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               242-441, - strand, RNAz p=0.999739
               

               
               272-444, - strand, RNAz p=0.989917

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               242-441, - strand, RNAz p=0.999739
               

               
               272-444, - strand, RNAz p=0.989917

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               208-339, - strand, RNAmicro p=0.999985
               

               
               178-312, + strand, RNAmicro p=0.999459

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               208-339, - strand, RNAmicro p=0.999985
               

               
               178-312, + strand, RNAmicro p=0.999459

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-501, gnl|bosTau2|chr19 (47554531-47554061)
               

               
               3-501, gnl|echTel1|scaffold_297944 (765-315)
               

               
               3-501, gnl|hg17|chr17 (77914072-77914535)
               

               
               3-501, gnl|Hg17|chr17 (77914072-77914531)
               

               
               3-501, gnl|loxAfr1|scaffold_43907 (3326-3801)
               

               
               3-501, gnl|mm7|chr11 (121256637-121257069)
               

               
               3-501, gnl|panTro1|chr19 (81692252-81692715)
               

               
               3-501, gnl|rheMac2|chr16 (77844097-77844579)
               

               
               3-501, gnl|rn3|chr10 (110392986-110393381)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-501, gnl|bosTau2|chr19 (47554531-47554061)
               

               
               3-501, gnl|echTel1|scaffold_297944 (765-315)
               

               
               3-501, gnl|hg17|chr17 (77914072-77914535)
               

               
               3-501, gnl|Hg17|chr17 (77914072-77914531)
               

               
               3-501, gnl|loxAfr1|scaffold_43907 (3326-3801)
               

               
               3-501, gnl|mm7|chr11 (121256637-121257069)
               

               
               3-501, gnl|panTro1|chr19 (81692252-81692715)
               

               
               3-501, gnl|rheMac2|chr16 (77844097-77844579)
               

               
               3-501, gnl|rn3|chr10 (110392986-110393381)

	242-441, - strand, RNAz p=0.999739
	272-444, - strand, RNAz p=0.989917

	208-339, - strand, RNAmicro p=0.999985
	178-312, + strand, RNAmicro p=0.999459

	3-501, gnl\|bosTau2\|chr19 (47554531-47554061)
	3-501, gnl\|echTel1\|scaffold_297944 (765-315)
	3-501, gnl\|hg17\|chr17 (77914072-77914535)
	3-501, gnl\|Hg17\|chr17 (77914072-77914531)
	3-501, gnl\|loxAfr1\|scaffold_43907 (3326-3801)
	3-501, gnl\|mm7\|chr11 (121256637-121257069)
	3-501, gnl\|panTro1\|chr19 (81692252-81692715)
	3-501, gnl\|rheMac2\|chr16 (77844097-77844579)
	3-501, gnl\|rn3\|chr10 (110392986-110393381)