Non-Coding RNA Search

Ss1.1-Pig1-41D06.5

Sequence:


               
               GAAGGAAGGGGACCTCTTGGTGTGGCATAGCGCCAAGAGGGACTCTGCACGGTTTCCGTT
TATGAAAAACAAGCACCATGTCACCATGGTGCTTTTTGTTCTTTGGAGTTTTGCCTTTAG
GTCCCTTCAAGCTGGACATTCCTTATGATGATGTCTTTCTCAGGAATATATTTTGGGAGA
TTGGGCAAGGGACGGTGAATGTGTATGAGACTTTGGCTGGGTATAAAGGTTATACTGTCT
CAGACTAAATATAGCAGAGGCTGCTGTGTCAGAAACCCAGCAGAAATGCCATACGTGTGT
GTGTATATATATATATATAAATATATATATATATGATTCACGATGACACTAAATGCATCA
GCATTCTAAAATACTGTGCTTCCAACCCTGTCTTAAAATACCAGTCCAGGGAGTTCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAGGAAGGGGACCTCTTGGTGTGGCATAGCGCCAAGAGGGACTCTGCACGGTTTCCGTT
TATGAAAAACAAGCACCATGTCACCATGGTGCTTTTTGTTCTTTGGAGTTTTGCCTTTAG
GTCCCTTCAAGCTGGACATTCCTTATGATGATGTCTTTCTCAGGAATATATTTTGGGAGA
TTGGGCAAGGGACGGTGAATGTGTATGAGACTTTGGCTGGGTATAAAGGTTATACTGTCT
CAGACTAAATATAGCAGAGGCTGCTGTGTCAGAAACCCAGCAGAAATGCCATACGTGTGT
GTGTATATATATATATATAAATATATATATATATGATTCACGATGACACTAAATGCATCA
GCATTCTAAAATACTGTGCTTCCAACCCTGTCTTAAAATACCAGTCCAGGGAGTTCCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               46-164, - strand, RNAz p=0.861069

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               46-164, - strand, RNAz p=0.861069

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               46-308, gnl|bosTau2|chr3 (23809995-23809731)
               

               
               46-308, gnl|Hg17|chr1 (115947816-115948038)
               

               
               46-308, gnl|Mm7|chr3 (101950461-101950236)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-308, gnl|bosTau2|chr3 (23809995-23809731)
               

               
               46-308, gnl|Hg17|chr1 (115947816-115948038)
               

               
               46-308, gnl|Mm7|chr3 (101950461-101950236)

	46-308, gnl\|bosTau2\|chr3 (23809995-23809731)
	46-308, gnl\|Hg17\|chr1 (115947816-115948038)
	46-308, gnl\|Mm7\|chr3 (101950461-101950236)