Non-Coding RNA Search

Ss1.1-Pig1-41F22.5

Sequence:


               
               TCAAGCGCAGCTGGGGGGCAGTGAGCCGGGAACCGTTATCTACTTTCAGGAAACTTTCGC
AGATTTTCTCCGATGAAAACAACCACCTCAGCAGCAGAGAGATTCTTTCCCAGGACGAGG
CCACCAAGGCATCCCAAGAGGAGGACACCCCCCCAGGAAGCCTGCTCTCAAAACTGCCCC
CAGGGCCTGTCCCCTACCTTGGCACCTTTCTCACGGACCTGGTTATGCTGGATACAGCCC
TGCCGGACATACTGGAGGGGGATCTCATCAACTTTGAGAAGAGGAGAAAGGAATGGGAGA
TCCTGGCCCGCATCCAGCAGCTGCAGAGGCGCTGTCATCCTGCTCCTGCTCCTGACCCCA
ACTCATTTAGTGCATGGGCCTCCTGATATCCCAGCCCCTGACCTTGACCCTTGATCCTTG
ACCCTGGAGGCTCCAGTTCAGATAAAGTTTGCCCCCAGGGGGATCTCATCAACTTTGAGA
AGAGGAGAAAGGTAAGTGGGCACCTGAGTGGGTGTGGGGAGTGGGGAGTCCAGGGTGGGG
GCAGGGCAGGGTGGGGTCTCAGAGGCCGCCCCCTCAGGAATGGGAGATCCTGGCCCGCAT
CCAGCAGCTGCAGAGGCGCTGTCAGAGCTACTGCCTGAGCCCCCGCCTGCCTGTCCTGGC
TGCCCTGCGTGCTCAGTGCCAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCAAGCGCAGCTGGGGGGCAGTGAGCCGGGAACCGTTATCTACTTTCAGGAAACTTTCGC
AGATTTTCTCCGATGAAAACAACCACCTCAGCAGCAGAGAGATTCTTTCCCAGGACGAGG
CCACCAAGGCATCCCAAGAGGAGGACACCCCCCCAGGAAGCCTGCTCTCAAAACTGCCCC
CAGGGCCTGTCCCCTACCTTGGCACCTTTCTCACGGACCTGGTTATGCTGGATACAGCCC
TGCCGGACATACTGGAGGGGGATCTCATCAACTTTGAGAAGAGGAGAAAGGAATGGGAGA
TCCTGGCCCGCATCCAGCAGCTGCAGAGGCGCTGTCATCCTGCTCCTGCTCCTGACCCCA
ACTCATTTAGTGCATGGGCCTCCTGATATCCCAGCCCCTGACCTTGACCCTTGATCCTTG
ACCCTGGAGGCTCCAGTTCAGATAAAGTTTGCCCCCAGGGGGATCTCATCAACTTTGAGA
AGAGGAGAAAGGTAAGTGGGCACCTGAGTGGGTGTGGGGAGTGGGGAGTCCAGGGTGGGG
GCAGGGCAGGGTGGGGTCTCAGAGGCCGCCCCCTCAGGAATGGGAGATCCTGGCCCGCAT
CCAGCAGCTGCAGAGGCGCTGTCAGAGCTACTGCCTGAGCCCCCGCCTGCCTGTCCTGGC
TGCCCTGCGTGCTCAGTGCCAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               431-578, + strand, RNAz p=0.836435

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-578, + strand, RNAz p=0.836435

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               431-684, gnl|bosTau2|chr7 (11246414-11246153)
               

               
               431-684, gnl|Hg17|chr19 (11373951-11373702)
               

               
               431-684, gnl|Mm7|chr9 (21855128-21854875)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               431-684, gnl|bosTau2|chr7 (11246414-11246153)
               

               
               431-684, gnl|Hg17|chr19 (11373951-11373702)
               

               
               431-684, gnl|Mm7|chr9 (21855128-21854875)

	431-684, gnl\|bosTau2\|chr7 (11246414-11246153)
	431-684, gnl\|Hg17\|chr19 (11373951-11373702)
	431-684, gnl\|Mm7\|chr9 (21855128-21854875)