Non-Coding RNA Search

Ss1.1-Pig1-42H08.5

Sequence:


               
               GGGGAAGTTGCTTTCTATAAACCCCTCACCTCAGTGACCAGCTACAGAGGAGATGGGTTC
CCAGCCCGGATAAATGGCGGCACCGGTGTCACCACTCGCAGCAGAGCTCGCATCCCTTCG
GCCCCGCCTCCTGAGAACGGGTCCCTTTCAGCCGGTCCCCAGGCCTCGAGACCCGAGAGC
CGGATGGAGACACCTCCCCGACACCCAGGGCACCGAGCGGTCCAGCAGGAATAAGCCAAC
GGTTGCTGCCTGGTATTTGAACATCATTTAATGAGGGCCCAGAATTCATCTGTAAATGTG
CTTTGTTAATTTAGGGCCTGCTCTTCATTAATTAGGGCTTTAGTGGCAAGTGCCACTGCA
CTATCTGCAATGTTTAAGGGTGCGTCAAGCCTTAGTAAACGGCTTGCTGATAACAAGCCG
CATCCATCTTCGTTACTCAGCCACTCCTGTCTGACTTTGCTCAGCATCTTCGAAGCGCCA
GGCCTCTTGGAACTGAAGAATTAAACTTTTATCCAAACCAGATTCTGCTCTTTCACCCCT
CTGATTCCTTGAGTACTTCCCATTTATTTTGCCTAAATGACATCTGATTACCTAACATGG
AGTGGAGCGAGGTCTTAACCTAAAACAGCCTGCAGACCTCAGTTCTCAGCCGGAGAATTC
CGGTGGGTTAGCGCCAAGGAAATCCTTACACTTCCATTTCATCCGATCCTGGGCTCAGCG
TAAGAGAAACAGTTTCTGATTTTTCTTCTCATAAGGTTGCAGTTCCAATAGATTTTTTTT
TTTTTAAAGCCTGAGAAATACAGGAAATTAATTTTAAACCTGGAGAATAAATGTCCCAAT
TGGTTCGAGTTTACTTTTGCTGTTTCTCTCTCTGAAAACATGTATCATTTGAGGCAATCA
CGGTGCCAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGAAGTTGCTTTCTATAAACCCCTCACCTCAGTGACCAGCTACAGAGGAGATGGGTTC
CCAGCCCGGATAAATGGCGGCACCGGTGTCACCACTCGCAGCAGAGCTCGCATCCCTTCG
GCCCCGCCTCCTGAGAACGGGTCCCTTTCAGCCGGTCCCCAGGCCTCGAGACCCGAGAGC
CGGATGGAGACACCTCCCCGACACCCAGGGCACCGAGCGGTCCAGCAGGAATAAGCCAAC
GGTTGCTGCCTGGTATTTGAACATCATTTAATGAGGGCCCAGAATTCATCTGTAAATGTG
CTTTGTTAATTTAGGGCCTGCTCTTCATTAATTAGGGCTTTAGTGGCAAGTGCCACTGCA
CTATCTGCAATGTTTAAGGGTGCGTCAAGCCTTAGTAAACGGCTTGCTGATAACAAGCCG
CATCCATCTTCGTTACTCAGCCACTCCTGTCTGACTTTGCTCAGCATCTTCGAAGCGCCA
GGCCTCTTGGAACTGAAGAATTAAACTTTTATCCAAACCAGATTCTGCTCTTTCACCCCT
CTGATTCCTTGAGTACTTCCCATTTATTTTGCCTAAATGACATCTGATTACCTAACATGG
AGTGGAGCGAGGTCTTAACCTAAAACAGCCTGCAGACCTCAGTTCTCAGCCGGAGAATTC
CGGTGGGTTAGCGCCAAGGAAATCCTTACACTTCCATTTCATCCGATCCTGGGCTCAGCG
TAAGAGAAACAGTTTCTGATTTTTCTTCTCATAAGGTTGCAGTTCCAATAGATTTTTTTT
TTTTTAAAGCCTGAGAAATACAGGAAATTAATTTTAAACCTGGAGAATAAATGTCCCAAT
TGGTTCGAGTTTACTTTTGCTGTTTCTCTCTCTGAAAACATGTATCATTTGAGGCAATCA
CGGTGCCAAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               254-413, + strand, RNAz p=0.795572

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               254-413, + strand, RNAz p=0.795572

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               32-912, gnl|bosTau2|chr3 (41296170-41295286)
               

               
               32-912, gnl|Hg17|chr1 (87702125-87703021)
               

               
               32-912, gnl|Mm7|chr3 (143905138-143904242)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-912, gnl|bosTau2|chr3 (41296170-41295286)
               

               
               32-912, gnl|Hg17|chr1 (87702125-87703021)
               

               
               32-912, gnl|Mm7|chr3 (143905138-143904242)

	32-912, gnl\|bosTau2\|chr3 (41296170-41295286)
	32-912, gnl\|Hg17\|chr1 (87702125-87703021)
	32-912, gnl\|Mm7\|chr3 (143905138-143904242)