Non-Coding RNA Search

Ss1.1-Pig1-42L03.5

Sequence:


               
               GCTCACCGGTTTAGAGGATTAAGCTGCAGATACCCGTAACATCGCTGTCTCTCTTCTCCG
AGATTTCTTCAAAATGGCATACCCAAATTATGAGAAGAATTATTTTGAAGGAGCAATAGA
TGAAGAAAATGTGATTCTTACATTGGTTCCAGTTAATGAGGAAATTATTGAAGACCATCA
GATGGAACCAGGTGTTTCTTCAGCTTTGGAAGTCAAGAGTACAAATGATGAAGTTCATCC
TCCTGAAACCAACAAACAGTTCAAAGCTAGCCCAAAATCATGTCATAAAACAATTCATCC
TTTGCCGAGCATTTTGCCTCCAATTAATCAAGTGAATCGGAACACTTTGCGGAACTGGTG
TCAACAACTTAATTTGAGTACCAGTGGCCAGAAAATAGAGGTTTATATGAGACTCCGGAC
ATATGCTTATTCTGAAAAAGATCAGTATATTCCTGAAACATCATGGGAGACCAGATTGCA
GTCAGCTTCAAGGAAACACAAGATGGTGACCAAGAGACCAAGAGTTCAGAAAAGTAAGAT
GAGTGAGAGAGGGGAAAAGACCAACATGGTTGAAGTGGTAACTCCGGCTCAGGAGGCCAT
GTTGGCAGCATGGTCAAGAATTGCTTCAAGAGCCGTTCACCCTAAGGCTGTGAATTTACC
TCCCGTTCCTGCTTCTGTTGAGACCTTTCTGCCACAAGCCTCTGGTGTCCGATGGTGTGT
GGTCCACGGCAGACCGTGTTTTGCAGATACAGAAGGTTGGGTTCGCCTGCAGCTCCATGC
AGGTCAGGCCTGGGTGCCTCATACCCCTAGGAAGATGATCTCTCTCTTCATGTTACCTGC
CTGCACTTTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCACCGGTTTAGAGGATTAAGCTGCAGATACCCGTAACATCGCTGTCTCTCTTCTCCG
AGATTTCTTCAAAATGGCATACCCAAATTATGAGAAGAATTATTTTGAAGGAGCAATAGA
TGAAGAAAATGTGATTCTTACATTGGTTCCAGTTAATGAGGAAATTATTGAAGACCATCA
GATGGAACCAGGTGTTTCTTCAGCTTTGGAAGTCAAGAGTACAAATGATGAAGTTCATCC
TCCTGAAACCAACAAACAGTTCAAAGCTAGCCCAAAATCATGTCATAAAACAATTCATCC
TTTGCCGAGCATTTTGCCTCCAATTAATCAAGTGAATCGGAACACTTTGCGGAACTGGTG
TCAACAACTTAATTTGAGTACCAGTGGCCAGAAAATAGAGGTTTATATGAGACTCCGGAC
ATATGCTTATTCTGAAAAAGATCAGTATATTCCTGAAACATCATGGGAGACCAGATTGCA
GTCAGCTTCAAGGAAACACAAGATGGTGACCAAGAGACCAAGAGTTCAGAAAAGTAAGAT
GAGTGAGAGAGGGGAAAAGACCAACATGGTTGAAGTGGTAACTCCGGCTCAGGAGGCCAT
GTTGGCAGCATGGTCAAGAATTGCTTCAAGAGCCGTTCACCCTAAGGCTGTGAATTTACC
TCCCGTTCCTGCTTCTGTTGAGACCTTTCTGCCACAAGCCTCTGGTGTCCGATGGTGTGT
GGTCCACGGCAGACCGTGTTTTGCAGATACAGAAGGTTGGGTTCGCCTGCAGCTCCATGC
AGGTCAGGCCTGGGTGCCTCATACCCCTAGGAAGATGATCTCTCTCTTCATGTTACCTGC
CTGCACTTTCCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17390151|gb|AAH18070.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17390151|gb|AAH18070.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               730-849, - strand, RNAz p=0.597865

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               730-849, - strand, RNAz p=0.597865

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               8-849, gnl|bosTau2|chr11 (30117682-30118535)
               

               
               8-849, gnl|Hg17|chr1 (26530897-26530081)
               

               
               8-849, gnl|Mm7|chr19 (41353606-41354427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               8-849, gnl|bosTau2|chr11 (30117682-30118535)
               

               
               8-849, gnl|Hg17|chr1 (26530897-26530081)
               

               
               8-849, gnl|Mm7|chr19 (41353606-41354427)

	8-849, gnl\|bosTau2\|chr11 (30117682-30118535)
	8-849, gnl\|Hg17\|chr1 (26530897-26530081)
	8-849, gnl\|Mm7\|chr19 (41353606-41354427)