Non-Coding RNA Search

Ss1.1-Pig1-43I22.5

Sequence:


               
               GGAGGGGGCCCAGGGGGAGGGATGTGTCCCCTGAGGTTGGACCTGAGGAATGTTCAGACC
AATTCACTAGGCAGAGGGGGAAGGGGCCAGTCTCCATCACCAGGCCAATTAAAAACAGTC
AGCCAGGAGGAACCTCTCTCCCTCCTGGGGCTACTCTCCCAGTTACCTCTCAGGTTCGGA
GGGGAGGAGGGAGGAGGGACATTTTACATTTTGCCCTGGCTTGCTTCGGATAGTGAGTGA
ATTGCTGGCTTCACAGAAGATGGAGACAGTGCAGTCAGATCAATCTCCATCACACCCTAG
GCTGGATGTTCATGTGAGCTCATCAAAGTCTGGGCTCAGTTCTCAGGACAGGCCACAGGA
CATCCTGCCCACACCTGGCAAGGTCTCTGAAGCTGGTTTTATCTCAGCAGTAAGGCCTGG
ACCAGCTACTTGCTCCTTCGCTTATCACGTGGAAAGTCTGCTGAGAGAGGGTAAAAGCGG
CTGGTAGAAACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGGGGCCCAGGGGGAGGGATGTGTCCCCTGAGGTTGGACCTGAGGAATGTTCAGACC
AATTCACTAGGCAGAGGGGGAAGGGGCCAGTCTCCATCACCAGGCCAATTAAAAACAGTC
AGCCAGGAGGAACCTCTCTCCCTCCTGGGGCTACTCTCCCAGTTACCTCTCAGGTTCGGA
GGGGAGGAGGGAGGAGGGACATTTTACATTTTGCCCTGGCTTGCTTCGGATAGTGAGTGA
ATTGCTGGCTTCACAGAAGATGGAGACAGTGCAGTCAGATCAATCTCCATCACACCCTAG
GCTGGATGTTCATGTGAGCTCATCAAAGTCTGGGCTCAGTTCTCAGGACAGGCCACAGGA
CATCCTGCCCACACCTGGCAAGGTCTCTGAAGCTGGTTTTATCTCAGCAGTAAGGCCTGG
ACCAGCTACTTGCTCCTTCGCTTATCACGTGGAAAGTCTGCTGAGAGAGGGTAAAAGCGG
CTGGTAGAAACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               119-225, - strand, RNAz p=0.943424
               

               
               377-490, + strand, RNAz p=0.827843

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-225, - strand, RNAz p=0.943424
               

               
               377-490, + strand, RNAz p=0.827843

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               172-268, - strand, RNAmicro p=0.929874

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               172-268, - strand, RNAmicro p=0.929874

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_001003943, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_001003943, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-490, gnl|bosTau2|chr10 (23201723-23201241)
               

               
               2-490, gnl|Hg17|chr15 (38168696-38169193)
               

               
               2-490, gnl|Mm7|chr2 (118270931-118271452)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-490, gnl|bosTau2|chr10 (23201723-23201241)
               

               
               2-490, gnl|Hg17|chr15 (38168696-38169193)
               

               
               2-490, gnl|Mm7|chr2 (118270931-118271452)

	119-225, - strand, RNAz p=0.943424
	377-490, + strand, RNAz p=0.827843

	2-490, gnl\|bosTau2\|chr10 (23201723-23201241)
	2-490, gnl\|Hg17\|chr15 (38168696-38169193)
	2-490, gnl\|Mm7\|chr2 (118270931-118271452)