Non-Coding RNA Search

Ss1.1-Pig1-43K20.5

Sequence:


               
               GCACGTCTTACGCAGCGGGCGGCAGCGGCGGCGTTGGGGAGGCTGAGCTTGGCGCCTGCG
GGCTGGGTACCCAGTCTGGGAAAAGATGGCCCCACGGCCACCGAAGGGCCTAGCCCCAGC
TCTGCTCTGGGTCCTGAGCCTTTTCATTGGCCTCCCAAGCCCAGTTTTGGTTCAGCCCTC
TCCTCCTCCCCAATCTTCTCCCCCTACTGAACCTCATCCATGTCATACCTGCCGGGGACT
GGTGGACAGCTTCTACAAGGGCCTGGAGAGAACCATCCGGGACAACTTTGGAGGCGGAAA
CACTGCCTGGGAGGAAGGGAAGTTATCCAAATACAAAGACAGTGAGACCCGCCTGGTAGA
GGTGCTTGAGGGCGTGTGCAGCAAGTCGGACTTCGAGTGCCACCGCCTTCTGGAGCTGAG
TGAGGAGCTGGTGGAGAGCTGGTGGTTCCACAAGCAGCAGGAAGCCCCAGACCTTTTCCA
GTGGCTCTGCTCAGATTCCCTGAAGCTCTGCTGCCCCTCAGGCACCTTTGGGCCCACCTG
CCTTCCCTGCCCTGGGGGCACGGAGCGGCCCTGCGGTGGCTACGGGCAGTGTGAAGGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACGTCTTACGCAGCGGGCGGCAGCGGCGGCGTTGGGGAGGCTGAGCTTGGCGCCTGCG
GGCTGGGTACCCAGTCTGGGAAAAGATGGCCCCACGGCCACCGAAGGGCCTAGCCCCAGC
TCTGCTCTGGGTCCTGAGCCTTTTCATTGGCCTCCCAAGCCCAGTTTTGGTTCAGCCCTC
TCCTCCTCCCCAATCTTCTCCCCCTACTGAACCTCATCCATGTCATACCTGCCGGGGACT
GGTGGACAGCTTCTACAAGGGCCTGGAGAGAACCATCCGGGACAACTTTGGAGGCGGAAA
CACTGCCTGGGAGGAAGGGAAGTTATCCAAATACAAAGACAGTGAGACCCGCCTGGTAGA
GGTGCTTGAGGGCGTGTGCAGCAAGTCGGACTTCGAGTGCCACCGCCTTCTGGAGCTGAG
TGAGGAGCTGGTGGAGAGCTGGTGGTTCCACAAGCAGCAGGAAGCCCCAGACCTTTTCCA
GTGGCTCTGCTCAGATTCCCTGAAGCTCTGCTGCCCCTCAGGCACCTTTGGGCCCACCTG
CCTTCCCTGCCCTGGGGGCACGGAGCGGCCCTGCGGTGGCTACGGGCAGTGTGAAGGGGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26335061|dbj|BAC31231.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26335061|dbj|BAC31231.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               66-184, + strand, RNAz p=0.993648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-184, + strand, RNAz p=0.993648

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_015513, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_015513, +

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               66-260, gnl|bosTau2|chr22 (12034340-12034534)
               

               
               66-260, gnl|Hg17|chr3 (9951103-9951297)
               

               
               66-260, gnl|Mm7|chr6 (113644812-113645006)
               


               
               340-454, gnl|bosTau2|chr22 (12037422-12037536)
               

               
               340-454, gnl|canFam2|chr20 (11341497-11341376)
               

               
               340-454, gnl|danRer3|chrNA (124329966-124329846)
               

               
               340-454, gnl|echTel1|scaffold_325473 (110210-110331)
               

               
               340-454, gnl|fr1|chrUn (73063439-73063560)
               

               
               340-454, gnl|hg17|chr3 (9954243-9954364)
               

               
               340-454, gnl|Hg17|chr3 (9954243-9954357)
               

               
               340-454, gnl|loxAfr1|scaffold_64300 (4201-4080)
               

               
               340-454, gnl|mm7|chr6 (113648997-113649118)
               

               
               340-454, gnl|Mm7|chr6 (113648997-113649111)
               

               
               340-454, gnl|monDom2|scaffold_5 (36707108-36707229)
               

               
               340-454, gnl|oryCun1|scaffold_190722 (4087-4207)
               

               
               340-454, gnl|panTro1|chr2 (10329279-10329400)
               

               
               340-454, gnl|rheMac2|chr2 (51031551-51031430)
               

               
               340-454, gnl|rn3|chr4 (149624814-149624935)
               

               
               340-454, gnl|tetNig1|chr9 (6707206-6707086)
               

               
               340-454, gnl|xenTro1|scaffold_395 (1093474-1093356)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-260, gnl|bosTau2|chr22 (12034340-12034534)
               

               
               66-260, gnl|Hg17|chr3 (9951103-9951297)
               

               
               66-260, gnl|Mm7|chr6 (113644812-113645006)
               


               
               340-454, gnl|bosTau2|chr22 (12037422-12037536)
               

               
               340-454, gnl|canFam2|chr20 (11341497-11341376)
               

               
               340-454, gnl|danRer3|chrNA (124329966-124329846)
               

               
               340-454, gnl|echTel1|scaffold_325473 (110210-110331)
               

               
               340-454, gnl|fr1|chrUn (73063439-73063560)
               

               
               340-454, gnl|hg17|chr3 (9954243-9954364)
               

               
               340-454, gnl|Hg17|chr3 (9954243-9954357)
               

               
               340-454, gnl|loxAfr1|scaffold_64300 (4201-4080)
               

               
               340-454, gnl|mm7|chr6 (113648997-113649118)
               

               
               340-454, gnl|Mm7|chr6 (113648997-113649111)
               

               
               340-454, gnl|monDom2|scaffold_5 (36707108-36707229)
               

               
               340-454, gnl|oryCun1|scaffold_190722 (4087-4207)
               

               
               340-454, gnl|panTro1|chr2 (10329279-10329400)
               

               
               340-454, gnl|rheMac2|chr2 (51031551-51031430)
               

               
               340-454, gnl|rn3|chr4 (149624814-149624935)
               

               
               340-454, gnl|tetNig1|chr9 (6707206-6707086)
               

               
               340-454, gnl|xenTro1|scaffold_395 (1093474-1093356)

	66-260, gnl\|bosTau2\|chr22 (12034340-12034534)
	66-260, gnl\|Hg17\|chr3 (9951103-9951297)
	66-260, gnl\|Mm7\|chr6 (113644812-113645006)

	340-454, gnl\|bosTau2\|chr22 (12037422-12037536)
	340-454, gnl\|canFam2\|chr20 (11341497-11341376)
	340-454, gnl\|danRer3\|chrNA (124329966-124329846)
	340-454, gnl\|echTel1\|scaffold_325473 (110210-110331)
	340-454, gnl\|fr1\|chrUn (73063439-73063560)
	340-454, gnl\|hg17\|chr3 (9954243-9954364)
	340-454, gnl\|Hg17\|chr3 (9954243-9954357)
	340-454, gnl\|loxAfr1\|scaffold_64300 (4201-4080)
	340-454, gnl\|mm7\|chr6 (113648997-113649118)
	340-454, gnl\|Mm7\|chr6 (113648997-113649111)
	340-454, gnl\|monDom2\|scaffold_5 (36707108-36707229)
	340-454, gnl\|oryCun1\|scaffold_190722 (4087-4207)
	340-454, gnl\|panTro1\|chr2 (10329279-10329400)
	340-454, gnl\|rheMac2\|chr2 (51031551-51031430)
	340-454, gnl\|rn3\|chr4 (149624814-149624935)
	340-454, gnl\|tetNig1\|chr9 (6707206-6707086)
	340-454, gnl\|xenTro1\|scaffold_395 (1093474-1093356)