Non-Coding RNA Search

Ss1.1-Pig1-44N07.5

Sequence:


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGTGGG
CAGTGGGCCTTTATTCATGATCCCTTAATGATCACTAAGACCTGGGTAGGCAGTGAGTCC
GGGGCTGCCCTTCCAGCAGGAGGAAGGATGTCCTTTTTAGAGGAGGGTCCCAGGGCTTTG
GCCTTAGAGCTTGGTGAGGTTCCTAGTCCCATGTCCTGACAGCGCCTCCCCTACATCTTC
ACAGGTCAGTTCTTTGTGATGATGTCACCACAAGAAGTGTTACAAGGTGGCAGCCAGCGC
TCTATTGCTCCCAGGACCCACCCTTATTCCCCGTGAGTGACCCTTGTTTCATCTCAGTTA
CTGGGAATGGTCTTGATTCTTTCCAGATTTGATGTCCTCCCTTACCCAATCTCCAATCTT
ATTTCTTGACGTTCCCTCACTCTGGCTACCCTGGGCTCTGTTGTTAGGAAGTCAGAAGCT
CCTCGGACAACTCGGGATGAGAAACGCAGGGCTCAGCATAATGAAGGTGGGTGTGATCTG
AGTGTGAAGCTTGGAGCTGTCTGGTCGGGCTGGGGACAGCAGTGACACTGGGGGGAAAGG
TTAAGAAATGTTACCACCTTGGGGCCTTTGGTGAGTTCTCTTCAAGTCACCTTGTCCTCT
GCTCCCCCTGCCCCCACAGTGGAACGCCGCCGTCGAGACAAGATTAACAACTGGATTGTA
CAGCTGTCCAAGATCATCCCAGACTGCTCCATGGAGAGCACCAAGTCTGGCCAGGTCATG
GAAAGACCCTGGTAGTGGGCAGGATGCCTGANTTCTGTCTCCTGGTATTGTTTCCAGAAA
TGGAAGAGAGTGGGCACACATGGCAGTAGTCTTTTCTTATCTTTCTCTGATGTTCCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGTGGG
CAGTGGGCCTTTATTCATGATCCCTTAATGATCACTAAGACCTGGGTAGGCAGTGAGTCC
GGGGCTGCCCTTCCAGCAGGAGGAAGGATGTCCTTTTTAGAGGAGGGTCCCAGGGCTTTG
GCCTTAGAGCTTGGTGAGGTTCCTAGTCCCATGTCCTGACAGCGCCTCCCCTACATCTTC
ACAGGTCAGTTCTTTGTGATGATGTCACCACAAGAAGTGTTACAAGGTGGCAGCCAGCGC
TCTATTGCTCCCAGGACCCACCCTTATTCCCCGTGAGTGACCCTTGTTTCATCTCAGTTA
CTGGGAATGGTCTTGATTCTTTCCAGATTTGATGTCCTCCCTTACCCAATCTCCAATCTT
ATTTCTTGACGTTCCCTCACTCTGGCTACCCTGGGCTCTGTTGTTAGGAAGTCAGAAGCT
CCTCGGACAACTCGGGATGAGAAACGCAGGGCTCAGCATAATGAAGGTGGGTGTGATCTG
AGTGTGAAGCTTGGAGCTGTCTGGTCGGGCTGGGGACAGCAGTGACACTGGGGGGAAAGG
TTAAGAAATGTTACCACCTTGGGGCCTTTGGTGAGTTCTCTTCAAGTCACCTTGTCCTCT
GCTCCCCCTGCCCCCACAGTGGAACGCCGCCGTCGAGACAAGATTAACAACTGGATTGTA
CAGCTGTCCAAGATCATCCCAGACTGCTCCATGGAGAGCACCAAGTCTGGCCAGGTCATG
GAAAGACCCTGGTAGTGGGCAGGATGCCTGANTTCTGTCTCCTGGTATTGTTTCCAGAAA
TGGAAGAGAGTGGGCACACATGGCAGTAGTCTTTTCTTATCTTTCTCTGATGTTCCTGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               213-383, - strand, RNAz p=0.722757
               

               
               696-854, - strand, RNAz p=0.954535

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               213-383, - strand, RNAz p=0.722757
               

               
               696-854, - strand, RNAz p=0.954535

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               55-900, gnl|bosTau2|chr3 (7754031-7754876)
               

               
               55-900, gnl|Hg17|chr1 (157824454-157823317)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-900, gnl|bosTau2|chr3 (7754031-7754876)
               

               
               55-900, gnl|Hg17|chr1 (157824454-157823317)

	213-383, - strand, RNAz p=0.722757
	696-854, - strand, RNAz p=0.954535

	55-900, gnl\|bosTau2\|chr3 (7754031-7754876)
	55-900, gnl\|Hg17\|chr1 (157824454-157823317)