Ss1.1-Pig1-44N20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGCCATCCACTGTCCCAAGCCAGGCCCGGCCATCCACGGTCCAGTGGCTTAACCCTCA GTCTCCAACCACGCCGAGCTGCAACACAGCTCTGACACCGCCTTCACCCAAGCTGTCGCC TTTCCCACTCTCTCTTCCTGCCACCATAGTGGACAAGCCACCAGAAAGCGTCATCAACCG GAAGGCGCGCGCGGTGTACCCCTGTGAAGCAGAACACAGCTCGGAGTTGTCTTTCGAAAT AGGAGCAATCTTTGAGGATGTGCAAACCTCGAGGGAACCTGGCTGGCTCGAAGGCACTTT GAATGGCAAGAGGGGTCTGATTCCACAGAATTACGTCAAGTTGCTGTAGCGCTGGCCCCT GGCGGCCCCACGCAGACCCTGGCCGGGGTCCGGGAGCACCGTCTGCCTGGGGCAGAACCC ACAGCCGCCTGCCAGGACAGACCAGGAGGACGGACAGATCACCGATTGGCACTCCAGGAG GGGGAGGGGGACTTACTGCTAGAGGTGGGGGGAGGGGGGCGCACGGCTCAGACCTGCGTA AGGCGGTGCTGCGGGAGGAGGGCATCTGGATGGACAGAAGACACCTTTCACCTGTCAGGC CTTGGGACTTGGAACTTTTAATTATCTGGTTTATAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGCCATCCACTGTCCCAAGCCAGGCCCGGCCATCCACGGTCCAGTGGCTTAACCCTCA GTCTCCAACCACGCCGAGCTGCAACACAGCTCTGACACCGCCTTCACCCAAGCTGTCGCC TTTCCCACTCTCTCTTCCTGCCACCATAGTGGACAAGCCACCAGAAAGCGTCATCAACCG GAAGGCGCGCGCGGTGTACCCCTGTGAAGCAGAACACAGCTCGGAGTTGTCTTTCGAAAT AGGAGCAATCTTTGAGGATGTGCAAACCTCGAGGGAACCTGGCTGGCTCGAAGGCACTTT GAATGGCAAGAGGGGTCTGATTCCACAGAATTACGTCAAGTTGCTGTAGCGCTGGCCCCT GGCGGCCCCACGCAGACCCTGGCCGGGGTCCGGGAGCACCGTCTGCCTGGGGCAGAACCC ACAGCCGCCTGCCAGGACAGACCAGGAGGACGGACAGATCACCGATTGGCACTCCAGGAG GGGGAGGGGGACTTACTGCTAGAGGTGGGGGGAGGGGGGCGCACGGCTCAGACCTGCGTA AGGCGGTGCTGCGGGAGGAGGGCATCTGGATGGACAGAAGACACCTTTCACCTGTCAGGC CTTGGGACTTGGAACTTTTAATTATCTGGTTTATAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 35-151, - strand, RNAz p=0.680046 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 35-151, - strand, RNAz p=0.680046 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 16-168, gnl|bosTau2|chr17 (6046990-6047142) | |
| 16-168, gnl|canFam2|chr15 (49384803-49385012) | |
| 16-168, gnl|dasNov1|scaffold_5799 (7062-7274) | |
| 16-168, gnl|echTel1|scaffold_308913 (199386-199596) | |
| 16-168, gnl|hg17|chr4 (149341853-149342063) | |
| 16-168, gnl|Hg17|chr4 (149341904-149342056) | |
| 16-168, gnl|loxAfr1|scaffold_587 (55177-54986) | |
| 16-168, gnl|mm7|chr8 (75802901-75802694) | |
| 16-168, gnl|Mm7|chr8 (75802851-75802699) | |
| 16-168, gnl|monDom2|scaffold_9 (17016444-17016663) | |
| 16-168, gnl|oryCun1|scaffold_203087 (111660-111450) | |
| 16-168, gnl|panTro1|chr3 (166613869-166614079) | |
| 16-168, gnl|rheMac2|chr5 (140275705-140275915) | |
| 16-168, gnl|rn3|chr19 (32517913-32518118) | |
| 260-431, gnl|bosTau2|chr17 (6053745-6053920) | |
| 260-431, gnl|canFam2|chr15 (49393876-49394024) | |
| 260-431, gnl|dasNov1|scaffold_74597 (962-798) | |
| 260-431, gnl|echTel1|scaffold_224394 (12445-12605) | |
| 260-431, gnl|fr1|chrUn (26477752-26477886) | |
| 260-431, gnl|galGal2|chr4 (32579676-32579823) | |
| 260-431, gnl|hg17|chr4 (149350738-149350902) | |
| 260-431, gnl|Hg17|chr4 (149350748-149350942) | |
| 260-431, gnl|loxAfr1|scaffold_95861 (23-186) | |
| 260-431, gnl|mm7|chr8 (75794662-75794501) | |
| 260-431, gnl|Mm7|chr8 (75794650-75794459) | |
| 260-431, gnl|monDom2|scaffold_9 (17026502-17026667) | |
| 260-431, gnl|oryCun1|scaffold_203087 (100834-100671) | |
| 260-431, gnl|panTro1|chr3 (166622747-166622911) | |
| 260-431, gnl|rheMac2|chr5 (140284868-140285032) | |
| 260-431, gnl|rn3|chr19 (32526628-32526789) | |
| 260-431, gnl|tetNig1|chr18 (7186157-7186285) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 16-168, gnl|bosTau2|chr17 (6046990-6047142) | |
| 16-168, gnl|canFam2|chr15 (49384803-49385012) | |
| 16-168, gnl|dasNov1|scaffold_5799 (7062-7274) | |
| 16-168, gnl|echTel1|scaffold_308913 (199386-199596) | |
| 16-168, gnl|hg17|chr4 (149341853-149342063) | |
| 16-168, gnl|Hg17|chr4 (149341904-149342056) | |
| 16-168, gnl|loxAfr1|scaffold_587 (55177-54986) | |
| 16-168, gnl|mm7|chr8 (75802901-75802694) | |
| 16-168, gnl|Mm7|chr8 (75802851-75802699) | |
| 16-168, gnl|monDom2|scaffold_9 (17016444-17016663) | |
| 16-168, gnl|oryCun1|scaffold_203087 (111660-111450) | |
| 16-168, gnl|panTro1|chr3 (166613869-166614079) | |
| 16-168, gnl|rheMac2|chr5 (140275705-140275915) | |
| 16-168, gnl|rn3|chr19 (32517913-32518118) | |
| 260-431, gnl|bosTau2|chr17 (6053745-6053920) | |
| 260-431, gnl|canFam2|chr15 (49393876-49394024) | |
| 260-431, gnl|dasNov1|scaffold_74597 (962-798) | |
| 260-431, gnl|echTel1|scaffold_224394 (12445-12605) | |
| 260-431, gnl|fr1|chrUn (26477752-26477886) | |
| 260-431, gnl|galGal2|chr4 (32579676-32579823) | |
| 260-431, gnl|hg17|chr4 (149350738-149350902) | |
| 260-431, gnl|Hg17|chr4 (149350748-149350942) | |
| 260-431, gnl|loxAfr1|scaffold_95861 (23-186) | |
| 260-431, gnl|mm7|chr8 (75794662-75794501) | |
| 260-431, gnl|Mm7|chr8 (75794650-75794459) | |
| 260-431, gnl|monDom2|scaffold_9 (17026502-17026667) | |
| 260-431, gnl|oryCun1|scaffold_203087 (100834-100671) | |
| 260-431, gnl|panTro1|chr3 (166622747-166622911) | |
| 260-431, gnl|rheMac2|chr5 (140284868-140285032) | |
| 260-431, gnl|rn3|chr19 (32526628-32526789) | |
| 260-431, gnl|tetNig1|chr18 (7186157-7186285) |