Non-Coding RNA Search

Ss1.1-Pig1-45L21.5

Sequence:


               
               GTGCCAGGCGGAGTTCACCACCTTGGAGGACTTCGTTCAGCACAAGCTCCAGAAAGCCTG
CCAGCGGGTCCCTCAGGAGGCCCTGCCCGCCACCCCTGCTGCCACTGCCGCACTGCTGGG
TCAGGAGGTGGCGGACACATCAAAGAGGTCATTGTGGCCTCTGAAGCAGAGCCGGGGGAC
AGCGAGATGGCAGAGGCCCCGGGCAGCCCCCGCCATCAGGGGCCTGGGCTCCCCGGGGAG
GGCGAGCAGGCCCAGGTCAAGCTGCTGGTGAACAAGGACGGCCGCTACGTGTGCTCGCTG
TGCCACAAGACCTTCAAGACGGGCAGCATCCTCAAGGCCCACATGGTCACCCACAGCAGC
CGCAAGGACCACGAGTGCAAATTGTGTGGGGCCTCCTTCCGGACCAAGGGCTCGCTTATC
CGGCACCACCGACGGCACACAGATGAGCGCCCCTACAAGTGCGCCAAGTGTGGGAAGAGC
TTCCGGGAGTCGGGGGCGCTGACCCGGCACCTCAAGTCCCTCACCCCGTGCACGGAAAAA
ATCCGCTTCAGCCTGAGCAAAGATGTGGCTGTCGGCAAAGAGGACGCTCCCGCAGGGTCC
AGTGCTTCCTCTGTGGGGACTGTCACATCATCATCGGTGACAAGCGAGCCCATGGAGACG
TCACCCGTGATTCACCTGGTGACAGATGCCAAGGGCACTGTTATCCATGAAGTCCATGTC
CAGATGCAAGAGCTTCCCCTGGGCATGAAAGCCCTGGCCCCGGAGTCCCCAGGCCCTGTA
GACCTTCCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCAGGCGGAGTTCACCACCTTGGAGGACTTCGTTCAGCACAAGCTCCAGAAAGCCTG
CCAGCGGGTCCCTCAGGAGGCCCTGCCCGCCACCCCTGCTGCCACTGCCGCACTGCTGGG
TCAGGAGGTGGCGGACACATCAAAGAGGTCATTGTGGCCTCTGAAGCAGAGCCGGGGGAC
AGCGAGATGGCAGAGGCCCCGGGCAGCCCCCGCCATCAGGGGCCTGGGCTCCCCGGGGAG
GGCGAGCAGGCCCAGGTCAAGCTGCTGGTGAACAAGGACGGCCGCTACGTGTGCTCGCTG
TGCCACAAGACCTTCAAGACGGGCAGCATCCTCAAGGCCCACATGGTCACCCACAGCAGC
CGCAAGGACCACGAGTGCAAATTGTGTGGGGCCTCCTTCCGGACCAAGGGCTCGCTTATC
CGGCACCACCGACGGCACACAGATGAGCGCCCCTACAAGTGCGCCAAGTGTGGGAAGAGC
TTCCGGGAGTCGGGGGCGCTGACCCGGCACCTCAAGTCCCTCACCCCGTGCACGGAAAAA
ATCCGCTTCAGCCTGAGCAAAGATGTGGCTGTCGGCAAAGAGGACGCTCCCGCAGGGTCC
AGTGCTTCCTCTGTGGGGACTGTCACATCATCATCGGTGACAAGCGAGCCCATGGAGACG
TCACCCGTGATTCACCTGGTGACAGATGCCAAGGGCACTGTTATCCATGAAGTCCATGTC
CAGATGCAAGAGCTTCCCCTGGGCATGAAAGCCCTGGCCCCGGAGTCCCCAGGCCCTGTA
GACCTTCCCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|62087596|dbj|BAD92245.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|62087596|dbj|BAD92245.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               594-765, - strand, RNAz p=0.797797

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               594-765, - strand, RNAz p=0.797797

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               126-322, gnl|bosTau2|chr25 (5036885-5036689)
               

               
               126-322, gnl|Hg17|chr16 (2222171-2222367)
               

               
               126-322, gnl|Mm7|chr17 (22628318-22628122)
               


               
               594-765, gnl|bosTau2|chr25 (5036122-5035954)
               

               
               594-765, gnl|Hg17|chr16 (2223011-2223185)
               

               
               594-765, gnl|Mm7|chr17 (22627507-22627339)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               126-322, gnl|bosTau2|chr25 (5036885-5036689)
               

               
               126-322, gnl|Hg17|chr16 (2222171-2222367)
               

               
               126-322, gnl|Mm7|chr17 (22628318-22628122)
               


               
               594-765, gnl|bosTau2|chr25 (5036122-5035954)
               

               
               594-765, gnl|Hg17|chr16 (2223011-2223185)
               

               
               594-765, gnl|Mm7|chr17 (22627507-22627339)

	126-322, gnl\|bosTau2\|chr25 (5036885-5036689)
	126-322, gnl\|Hg17\|chr16 (2222171-2222367)
	126-322, gnl\|Mm7\|chr17 (22628318-22628122)

	594-765, gnl\|bosTau2\|chr25 (5036122-5035954)
	594-765, gnl\|Hg17\|chr16 (2223011-2223185)
	594-765, gnl\|Mm7\|chr17 (22627507-22627339)