Non-Coding RNA Search

Ss1.1-Pig1-45N12.5

Sequence:


               
               GAAAAATGAAGATTCTTCATGCTCTCTGTGGGAAACTACTGACCCTAGTTTCTACTAGGG
ATTTCATTGAAGATTATGTTGACATATTACGACAGGCAAAGCAGGAGTTCCGGGAGTTAA
AAGCAGAACAACATCGAAAAGAAAGGGAAGAAGCAGCTGCCAGAATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATGAAGATTCTTCATGCTCTCTGTGGGAAACTACTGACCCTAGTTTCTACTAGGG
ATTTCATTGAAGATTATGTTGACATATTACGACAGGCAAAGCAGGAGTTCCGGGAGTTAA
AAGCAGAACAACATCGAAAAGAAAGGGAAGAAGCAGCTGCCAGAATTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               2-121, + strand, RNAz p=0.784883

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-121, + strand, RNAz p=0.784883

Aligned organism(s): 16 entry(ies)

More info

Aligned organism(s): 16 entry(ies)

Help | Less info


               
               2-163, gnl|bosTau2|chr21 (29558602-29558441)
               

               
               2-163, gnl|canFam2|chr8 (16636200-16636388)
               

               
               2-163, gnl|dasNov1|scaffold_202584 (3651-3461)
               

               
               2-163, gnl|echTel1|scaffold_280993 (31795-31983)
               

               
               2-163, gnl|fr1|chrUn (93250635-93250828)
               

               
               2-163, gnl|galGal2|chr5 (32870655-32870844)
               

               
               2-163, gnl|hg17|chr14 (34322716-34322904)
               

               
               2-163, gnl|Hg17|chr14 (34322880-34322719)
               

               
               2-163, gnl|mm7|chr12 (52890792-52890975)
               

               
               2-163, gnl|Mm7|chr12 (52890956-52890795)
               

               
               2-163, gnl|monDom2|scaffold_73 (3616045-3615856)
               

               
               2-163, gnl|oryCun1|scaffold_173226 (6436-6624)
               

               
               2-163, gnl|rheMac2|chr7 (97742277-97742465)
               

               
               2-163, gnl|rn3|chr6 (75270047-75270230)
               

               
               2-163, gnl|tetNig1|chrUn_random (83001003-83000827)
               

               
               2-163, gnl|xenTro1|scaffold_117 (880411-880232)

Aligned organism(s): 16 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-163, gnl|bosTau2|chr21 (29558602-29558441)
               

               
               2-163, gnl|canFam2|chr8 (16636200-16636388)
               

               
               2-163, gnl|dasNov1|scaffold_202584 (3651-3461)
               

               
               2-163, gnl|echTel1|scaffold_280993 (31795-31983)
               

               
               2-163, gnl|fr1|chrUn (93250635-93250828)
               

               
               2-163, gnl|galGal2|chr5 (32870655-32870844)
               

               
               2-163, gnl|hg17|chr14 (34322716-34322904)
               

               
               2-163, gnl|Hg17|chr14 (34322880-34322719)
               

               
               2-163, gnl|mm7|chr12 (52890792-52890975)
               

               
               2-163, gnl|Mm7|chr12 (52890956-52890795)
               

               
               2-163, gnl|monDom2|scaffold_73 (3616045-3615856)
               

               
               2-163, gnl|oryCun1|scaffold_173226 (6436-6624)
               

               
               2-163, gnl|rheMac2|chr7 (97742277-97742465)
               

               
               2-163, gnl|rn3|chr6 (75270047-75270230)
               

               
               2-163, gnl|tetNig1|chrUn_random (83001003-83000827)
               

               
               2-163, gnl|xenTro1|scaffold_117 (880411-880232)

	2-163, gnl\|bosTau2\|chr21 (29558602-29558441)
	2-163, gnl\|canFam2\|chr8 (16636200-16636388)
	2-163, gnl\|dasNov1\|scaffold_202584 (3651-3461)
	2-163, gnl\|echTel1\|scaffold_280993 (31795-31983)
	2-163, gnl\|fr1\|chrUn (93250635-93250828)
	2-163, gnl\|galGal2\|chr5 (32870655-32870844)
	2-163, gnl\|hg17\|chr14 (34322716-34322904)
	2-163, gnl\|Hg17\|chr14 (34322880-34322719)
	2-163, gnl\|mm7\|chr12 (52890792-52890975)
	2-163, gnl\|Mm7\|chr12 (52890956-52890795)
	2-163, gnl\|monDom2\|scaffold_73 (3616045-3615856)
	2-163, gnl\|oryCun1\|scaffold_173226 (6436-6624)
	2-163, gnl\|rheMac2\|chr7 (97742277-97742465)
	2-163, gnl\|rn3\|chr6 (75270047-75270230)
	2-163, gnl\|tetNig1\|chrUn_random (83001003-83000827)
	2-163, gnl\|xenTro1\|scaffold_117 (880411-880232)