Ss1.1-Pig1-45O21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGGCGGCTCTTCGGGGTGCTCGGCTCCCTCCCATCTAGGCCGGCCCCGGCCCGTC TCGCCCCCAGGAACTCAGTTTGGGGCTGATAACTTAATCTTCGTGCCCTACAAAAGTAAA GCTTGGGGACCTGGGGGAGCCGGAAGTACCGCCTCGCGATCCCCAAATACTATCGGGGAA ACGGAAGTGACCGTCGGTGGCAGGTTGGGGGAGACCGGAAGTGACGAGAGCTGTCGGCCA TGGAGCCCAATGATAGTACCAGTACCACTATGGAAGAGCCTGAAAGCCTGGAGGTGCTGG TGAAGACCCTGGACTCTCAGACCCGGACCTTTATTGTGGGGGCCCAGATGAATGTAAAGG AGTTTAAGGAGCACATTGCTGCCTCTGTCAGCATCCCTTCTGAGAAACAACGGCTTATCT ACCAGGGCCGTGTTCTGCAGGATGATAAGAAGCTCCAGGAATACAATGTTGGAGGAAAAG TTATCCACCTTGTGGAACGGGCTCCTCCTCAGACTCAGCTCCCTTCAGGGGCATCTTCTG GAACAGGGTCTGCCTCAGCCACCCATGGTGGGGGACCCCCACCTGGTACTCGGGGGCCTG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGGCGGCTCTTCGGGGTGCTCGGCTCCCTCCCATCTAGGCCGGCCCCGGCCCGTC TCGCCCCCAGGAACTCAGTTTGGGGCTGATAACTTAATCTTCGTGCCCTACAAAAGTAAA GCTTGGGGACCTGGGGGAGCCGGAAGTACCGCCTCGCGATCCCCAAATACTATCGGGGAA ACGGAAGTGACCGTCGGTGGCAGGTTGGGGGAGACCGGAAGTGACGAGAGCTGTCGGCCA TGGAGCCCAATGATAGTACCAGTACCACTATGGAAGAGCCTGAAAGCCTGGAGGTGCTGG TGAAGACCCTGGACTCTCAGACCCGGACCTTTATTGTGGGGGCCCAGATGAATGTAAAGG AGTTTAAGGAGCACATTGCTGCCTCTGTCAGCATCCCTTCTGAGAAACAACGGCTTATCT ACCAGGGCCGTGTTCTGCAGGATGATAAGAAGCTCCAGGAATACAATGTTGGAGGAAAAG TTATCCACCTTGTGGAACGGGCTCCTCCTCAGACTCAGCTCCCTTCAGGGGCATCTTCTG GAACAGGGTCTGCCTCAGCCACCCATGGTGGGGGACCCCCACCTGGTACTCGGGGGCCTG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 45-158, - strand, RNAz p=0.54588 | |
| 77-237, + strand, RNAz p=0.643061 | |
| 466-600, + strand, RNAz p=0.877555 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-158, - strand, RNAz p=0.54588 | |
| 77-237, + strand, RNAz p=0.643061 | |
| 466-600, + strand, RNAz p=0.877555 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_004639, + |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 1-237, gnl|bosTau2|chr23 (23314782-23314544) | |
| 1-237, gnl|canFam2|chr12 (4141009-4141245) | |
| 1-237, gnl|dasNov1|scaffold_15034 (10355-10589) | |
| 1-237, gnl|echTel1|scaffold_301888 (34042-33802) | |
| 1-237, gnl|hg17|chr6 (31728047-31728295) | |
| 1-237, gnl|Hg17|chr6 (31728382-31728148) | |
| 1-237, gnl|loxAfr1|scaffold_24380 (34591-34832) | |
| 1-237, gnl|mm7|chr17 (33232717-33232483) | |
| 1-237, gnl|Mm7|chr17 (33232390-33232630) | |
| 1-237, gnl|monDom2|scaffold_42 (17813446-17813169) | |
| 1-237, gnl|oryCun1|scaffold_198577 (20079-20313) | |
| 1-237, gnl|panTro1|chr5 (32127323-32127589) | |
| 1-237, gnl|rheMac2|chr4 (31295083-31295318) | |
| 1-237, gnl|rn3|chr20 (3752201-3752431) | |
| 346-465, gnl|bosTau2|chr23 (23312721-23312602) | |
| 346-465, gnl|canFam2|chr12 (4138938-4139069) | |
| 346-465, gnl|danRer3|chr15 (38314448-38314576) | |
| 346-465, gnl|dasNov1|scaffold_15034 (8523-8654) | |
| 346-465, gnl|echTel1|scaffold_193190 (621-500) | |
| 346-465, gnl|fr1|chrUn (175750090-175749962) | |
| 346-465, gnl|hg17|chr6 (31725264-31725392) | |
| 346-465, gnl|Hg17|chr6 (31725385-31725266) | |
| 346-465, gnl|mm7|chr17 (33235642-33235515) | |
| 346-465, gnl|Mm7|chr17 (33235519-33235638) | |
| 346-465, gnl|monDom2|scaffold_42 (17815990-17815859) | |
| 346-465, gnl|oryCun1|scaffold_198577 (18025-18152) | |
| 346-465, gnl|panTro1|chr5 (32124509-32124637) | |
| 346-465, gnl|rheMac2|chr4 (31291948-31292079) | |
| 346-465, gnl|rn3|chr20 (3749313-3749440) | |
| 346-465, gnl|xenTro1|scaffold_895 (110294-110167) | |
| 466-600, gnl|bosTau2|chr23 (23312488-23312354) | |
| 466-600, gnl|Hg17|chr6 (31725151-31725017) | |
| 466-600, gnl|Mm7|chr17 (33235735-33235869) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-237, gnl|bosTau2|chr23 (23314782-23314544) | |
| 1-237, gnl|canFam2|chr12 (4141009-4141245) | |
| 1-237, gnl|dasNov1|scaffold_15034 (10355-10589) | |
| 1-237, gnl|echTel1|scaffold_301888 (34042-33802) | |
| 1-237, gnl|hg17|chr6 (31728047-31728295) | |
| 1-237, gnl|Hg17|chr6 (31728382-31728148) | |
| 1-237, gnl|loxAfr1|scaffold_24380 (34591-34832) | |
| 1-237, gnl|mm7|chr17 (33232717-33232483) | |
| 1-237, gnl|Mm7|chr17 (33232390-33232630) | |
| 1-237, gnl|monDom2|scaffold_42 (17813446-17813169) | |
| 1-237, gnl|oryCun1|scaffold_198577 (20079-20313) | |
| 1-237, gnl|panTro1|chr5 (32127323-32127589) | |
| 1-237, gnl|rheMac2|chr4 (31295083-31295318) | |
| 1-237, gnl|rn3|chr20 (3752201-3752431) | |
| 346-465, gnl|bosTau2|chr23 (23312721-23312602) | |
| 346-465, gnl|canFam2|chr12 (4138938-4139069) | |
| 346-465, gnl|danRer3|chr15 (38314448-38314576) | |
| 346-465, gnl|dasNov1|scaffold_15034 (8523-8654) | |
| 346-465, gnl|echTel1|scaffold_193190 (621-500) | |
| 346-465, gnl|fr1|chrUn (175750090-175749962) | |
| 346-465, gnl|hg17|chr6 (31725264-31725392) | |
| 346-465, gnl|Hg17|chr6 (31725385-31725266) | |
| 346-465, gnl|mm7|chr17 (33235642-33235515) | |
| 346-465, gnl|Mm7|chr17 (33235519-33235638) | |
| 346-465, gnl|monDom2|scaffold_42 (17815990-17815859) | |
| 346-465, gnl|oryCun1|scaffold_198577 (18025-18152) | |
| 346-465, gnl|panTro1|chr5 (32124509-32124637) | |
| 346-465, gnl|rheMac2|chr4 (31291948-31292079) | |
| 346-465, gnl|rn3|chr20 (3749313-3749440) | |
| 346-465, gnl|xenTro1|scaffold_895 (110294-110167) | |
| 466-600, gnl|bosTau2|chr23 (23312488-23312354) | |
| 466-600, gnl|Hg17|chr6 (31725151-31725017) | |
| 466-600, gnl|Mm7|chr17 (33235735-33235869) |