Non-Coding RNA Search

Ss1.1-Pig1-46K10.5

Sequence:


               
               ATTGCTATGGATATGGTGAAGGCCAGCAGCTGTAGCGCTCTGATTTGACCCCTAGCCTGG
AAATTCCATATGGCCATGGGCATGGCCCTAAAAAAAGACAAAGTAAAGAAAAAAGATTGA
TGATGAACATGGTTTTTTTTTTGTTGTTGTTCCTTAAGTACCTTCCAAAATTGACTTTTT
AAACTTCTAATATGGCATTTGACCCTCATAATAAGTTTGTTCAGTTATTCTTTGAAGTAA
AATCACATGTGTAACATATTTAGTACCCCACCTGGCAGGTATTGATAATTATGCATGTTA
GTCTGTTACACTTATTATTACCTCTCTCTCAGGATAAAGCTCCGGTAGAAAGCAGCCCGT
TTGGGAGCCTTCCTCCCAAAGCTCCAGGACACGATGCCTCCGTGGATGAAAATCCCTTTG
GCACTCGAAAAGCCAAATCCTCCTTTGGTCGTGGCTTTTTCAAAATAAAAAGTAGCAAGA
GGACAGCAAGTGCACCAAACTTGGGTACGTGTGGCCAAGAGGCCTTTGCCTTAGTTCTAC
CAGGAAGAGGAAAGAATTAATCCCTTCCCCTACCTTGTTCATCTATTTGTACATTTCTCC
TTCTCAGAAATGAAGGAGAATGACTTGGGGGGAGTTAGCAAAAAAAAAAAAAAGCTTCCA
TGGGCTTCATTCAGAGGGAAAATAGCTTGGTGTGTACGCTCACCTGCTCTCTGTTCTGGG
TGCCAACCTAGAGGAAAGACCAGTTTCCCAGGACTCTCTCTGCCTTCATGATAAACAGCT
TCCCTTCTGTTTCCAAAGTGGAGAAATTAACCCCAGATTGACAGTGCAACTGGAGTCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGCTATGGATATGGTGAAGGCCAGCAGCTGTAGCGCTCTGATTTGACCCCTAGCCTGG
AAATTCCATATGGCCATGGGCATGGCCCTAAAAAAAGACAAAGTAAAGAAAAAAGATTGA
TGATGAACATGGTTTTTTTTTTGTTGTTGTTCCTTAAGTACCTTCCAAAATTGACTTTTT
AAACTTCTAATATGGCATTTGACCCTCATAATAAGTTTGTTCAGTTATTCTTTGAAGTAA
AATCACATGTGTAACATATTTAGTACCCCACCTGGCAGGTATTGATAATTATGCATGTTA
GTCTGTTACACTTATTATTACCTCTCTCTCAGGATAAAGCTCCGGTAGAAAGCAGCCCGT
TTGGGAGCCTTCCTCCCAAAGCTCCAGGACACGATGCCTCCGTGGATGAAAATCCCTTTG
GCACTCGAAAAGCCAAATCCTCCTTTGGTCGTGGCTTTTTCAAAATAAAAAGTAGCAAGA
GGACAGCAAGTGCACCAAACTTGGGTACGTGTGGCCAAGAGGCCTTTGCCTTAGTTCTAC
CAGGAAGAGGAAAGAATTAATCCCTTCCCCTACCTTGTTCATCTATTTGTACATTTCTCC
TTCTCAGAAATGAAGGAGAATGACTTGGGGGGAGTTAGCAAAAAAAAAAAAAAGCTTCCA
TGGGCTTCATTCAGAGGGAAAATAGCTTGGTGTGTACGCTCACCTGCTCTCTGTTCTGGG
TGCCAACCTAGAGGAAAGACCAGTTTCCCAGGACTCTCTCTGCCTTCATGATAAACAGCT
TCCCTTCTGTTTCCAAAGTGGAGAAATTAACCCCAGATTGACAGTGCAACTGGAGTCTGT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               525-673, + strand, RNAz p=0.99085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               525-673, + strand, RNAz p=0.99085

Similar Transcript(s): 1 entry(ies)

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Similar Transcript(s): 1 entry(ies)

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               525-639, BW982460 full-length enriched swine cDNA library, adult intestine 
(dbj|BW982460.1|), blast E-value=0, identity=100%

Similar Transcript(s): 1 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               525-639, BW982460 full-length enriched swine cDNA library, adult intestine 
(dbj|BW982460.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               113-840, gnl|bosTau2|chr17 (24159123-24159837)
               

               
               113-840, gnl|Hg17|chr12 (27720388-27721114)
               

               
               113-840, gnl|Mm7|chr6 (147094380-147095040)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               113-840, gnl|bosTau2|chr17 (24159123-24159837)
               

               
               113-840, gnl|Hg17|chr12 (27720388-27721114)
               

               
               113-840, gnl|Mm7|chr6 (147094380-147095040)

	113-840, gnl\|bosTau2\|chr17 (24159123-24159837)
	113-840, gnl\|Hg17\|chr12 (27720388-27721114)
	113-840, gnl\|Mm7\|chr6 (147094380-147095040)