Ss1.1-Pig1-47F17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGCCAGGGTGACGTAGGGTCTAAAGCGATGTCATAAGCAGAGGTGGTCGTTGTCACCGC CCACGCCTTCTTGTTAACTGCCACTTTGCCTGACCTTCATCCCGGGTTTCCGAGATGCGC TTCTTTCCTGGCAACCTCATCCACCATCCGTAAGTAGGTTAAAGAGGCCTTTTCTTGATG CTGGTCTCTTCCCGCAGAGTGCAACTGCAACGAACATTCCAGCTCGTGCCACTTCGACAT GGCGGTTTACTTGGCCACCGGCAATGTCAGCGGAGGGGTGTGTGATGACTGTCAGCACAA CACCATGGGGCGCAACTGTGAGCGCTGCAAACCGTTCTACTACCAGCACCCAGAGAGGGA CGTTCGGGATCCTAACCTCTGTGAACGTACGTGGGGGCACGGTCACCAGGGGGCACCTCC GTGGAGGTCACCTTTCTGCCTGAATCATCGGCGAGGCACCCTCTTTCTCTCAGGGCTCAG ACCCAACCTTATTGTAGCTGCTTGTTGTGACATCTGCAAAGAAGGCTTCTATGGTTTAAC CGCTGAAGATCCATTTGGCTGTAAATCTTGCGCTTGCAATCCTCTGGGAACAATCCCGGG TGGGAATCCTTGTGATTCTGAGACCGGTTACTGCTACTGTAAGCGTCTGGTGACAGGACA GCATTGTGACCAGTGTCTGCCAGAGCACTGGGGCTTAAGCAACGATCTGGATGGATGTCG ACCTTGTGACTGTGACCTTGGGGGAGCCTTAAACAATAGTTGCTCTGCAGAGTCAGGCCA GTGCCTGTGCCGACCCCACATGATCGGACGTCAGTGCAACGANGGTGGAATCCGGGTTCT ACTTCACCACCTTGGACCACTACATCTATGAAGCCGAAGAAGCCAACTTTGGACCTGGGG TCAGCATTGTGGAACGGCAGTATGTCCAGGACCGGATTCCCTCCTGGACTGGTGCGGGTT TCGTCCGAGTGCCTGAAGGGGCGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGCCAGGGTGACGTAGGGTCTAAAGCGATGTCATAAGCAGAGGTGGTCGTTGTCACCGC CCACGCCTTCTTGTTAACTGCCACTTTGCCTGACCTTCATCCCGGGTTTCCGAGATGCGC TTCTTTCCTGGCAACCTCATCCACCATCCGTAAGTAGGTTAAAGAGGCCTTTTCTTGATG CTGGTCTCTTCCCGCAGAGTGCAACTGCAACGAACATTCCAGCTCGTGCCACTTCGACAT GGCGGTTTACTTGGCCACCGGCAATGTCAGCGGAGGGGTGTGTGATGACTGTCAGCACAA CACCATGGGGCGCAACTGTGAGCGCTGCAAACCGTTCTACTACCAGCACCCAGAGAGGGA CGTTCGGGATCCTAACCTCTGTGAACGTACGTGGGGGCACGGTCACCAGGGGGCACCTCC GTGGAGGTCACCTTTCTGCCTGAATCATCGGCGAGGCACCCTCTTTCTCTCAGGGCTCAG ACCCAACCTTATTGTAGCTGCTTGTTGTGACATCTGCAAAGAAGGCTTCTATGGTTTAAC CGCTGAAGATCCATTTGGCTGTAAATCTTGCGCTTGCAATCCTCTGGGAACAATCCCGGG TGGGAATCCTTGTGATTCTGAGACCGGTTACTGCTACTGTAAGCGTCTGGTGACAGGACA GCATTGTGACCAGTGTCTGCCAGAGCACTGGGGCTTAAGCAACGATCTGGATGGATGTCG ACCTTGTGACTGTGACCTTGGGGGAGCCTTAAACAATAGTTGCTCTGCAGAGTCAGGCCA GTGCCTGTGCCGACCCCACATGATCGGACGTCAGTGCAACGANGGTGGAATCCGGGTTCT ACTTCACCACCTTGGACCACTACATCTATGAAGCCGAAGAAGCCAACTTTGGACCTGGGG TCAGCATTGTGGAACGGCAGTATGTCCAGGACCGGATTCCCTCCTGGACTGGTGCGGGTT TCGTCCGAGTGCCTGAAGGGGCGT |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 564-679, - strand, RNAz p=0.759454 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 564-679, - strand, RNAz p=0.759454 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 135-502, gnl|bosTau2|chr4 (20131686-20132064) | |
| 135-502, gnl|Hg17|chr7 (107210316-107209963) | |
| 135-502, gnl|Mm7|chr12 (29127067-29127441) | |
| 564-679, gnl|bosTau2|chr4 (20132519-20132634) | |
| 564-679, gnl|canFam2|chr18 (15638855-15638710) | |
| 564-679, gnl|danRer3|chr4 (21908127-21908271) | |
| 564-679, gnl|dasNov1|scaffold_1020 (76681-76826) | |
| 564-679, gnl|echTel1|scaffold_136859 (1201-1075) | |
| 564-679, gnl|fr1|chrUn (264956493-264956617) | |
| 564-679, gnl|galGal2|chr1 (8788648-8788500) | |
| 564-679, gnl|hg17|chr7 (107209373-107209517) | |
| 564-679, gnl|Hg17|chr7 (107209497-107209382) | |
| 564-679, gnl|loxAfr1|scaffold_98628 (2254-2110) | |
| 564-679, gnl|mm7|chr12 (29128033-29127873) | |
| 564-679, gnl|Mm7|chr12 (29127908-29128023) | |
| 564-679, gnl|monDom2|scaffold_22 (44545336-44545198) | |
| 564-679, gnl|oryCun1|scaffold_212465 (57501-57355) | |
| 564-679, gnl|panTro1|chr6 (109125648-109125792) | |
| 564-679, gnl|rheMac2|chr3 (145393723-145393867) | |
| 564-679, gnl|rn3|chr6 (49141469-49141322) | |
| 564-679, gnl|tetNig1|chr13 (11450335-11450478) | |
| 564-679, gnl|xenTro1|scaffold_452 (856123-856262) | |
| 758-897, gnl|bosTau2|chr4 (20144778-20144916) | |
| 758-897, gnl|Hg17|chr7 (107199085-107198947) | |
| 758-897, gnl|Mm7|chr12 (29138071-29138209) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-502, gnl|bosTau2|chr4 (20131686-20132064) | |
| 135-502, gnl|Hg17|chr7 (107210316-107209963) | |
| 135-502, gnl|Mm7|chr12 (29127067-29127441) | |
| 564-679, gnl|bosTau2|chr4 (20132519-20132634) | |
| 564-679, gnl|canFam2|chr18 (15638855-15638710) | |
| 564-679, gnl|danRer3|chr4 (21908127-21908271) | |
| 564-679, gnl|dasNov1|scaffold_1020 (76681-76826) | |
| 564-679, gnl|echTel1|scaffold_136859 (1201-1075) | |
| 564-679, gnl|fr1|chrUn (264956493-264956617) | |
| 564-679, gnl|galGal2|chr1 (8788648-8788500) | |
| 564-679, gnl|hg17|chr7 (107209373-107209517) | |
| 564-679, gnl|Hg17|chr7 (107209497-107209382) | |
| 564-679, gnl|loxAfr1|scaffold_98628 (2254-2110) | |
| 564-679, gnl|mm7|chr12 (29128033-29127873) | |
| 564-679, gnl|Mm7|chr12 (29127908-29128023) | |
| 564-679, gnl|monDom2|scaffold_22 (44545336-44545198) | |
| 564-679, gnl|oryCun1|scaffold_212465 (57501-57355) | |
| 564-679, gnl|panTro1|chr6 (109125648-109125792) | |
| 564-679, gnl|rheMac2|chr3 (145393723-145393867) | |
| 564-679, gnl|rn3|chr6 (49141469-49141322) | |
| 564-679, gnl|tetNig1|chr13 (11450335-11450478) | |
| 564-679, gnl|xenTro1|scaffold_452 (856123-856262) | |
| 758-897, gnl|bosTau2|chr4 (20144778-20144916) | |
| 758-897, gnl|Hg17|chr7 (107199085-107198947) | |
| 758-897, gnl|Mm7|chr12 (29138071-29138209) |