Ss1.1-Pig1-47M21.5
|
TCAGGACCTGTTGGCCTACTGGATTACCTGAGAATTCCCCGGCCGAAACGGCTGCTGGGG
CAAGAAAGTTCTTGTTAGAACTTTCCACCTCCGGCTTCCCCTCCACCTCTCTTACTGTCC
CAACCTTCTGAGACGCTTTTTCTCCTCCCGAGGATTTATCTCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTTTTTTTTTTTTTTTTCCCCCCTTTCCCCCCCCAATGCTTTTTTTTTTTT
GGGAAAGAGGTTTTTTTTAAAGGGGCCGGGGGGGCCCCCTCTCTCCCCCCTTTTTGGGTT
TATTTTTTATGGGGGGGGGGGTTTTTTTTTTTTAAACCCCTTTTTTGTCCGGCCCGGGGA
TTTTCCCCCCCCCCCCCTTCCCGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TCAGGACCTGTTGGCCTACTGGATTACCTGAGAATTCCCCGGCCGAAACGGCTGCTGGGG
CAAGAAAGTTCTTGTTAGAACTTTCCACCTCCGGCTTCCCCTCCACCTCTCTTACTGTCC
CAACCTTCTGAGACGCTTTTTCTCCTCCCGAGGATTTATCTCTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTTTTTTTTTTTTTTTTCCCCCCTTTCCCCCCCCAATGCTTTTTTTTTTTT
GGGAAAGAGGTTTTTTTTAAAGGGGCCGGGGGGGCCCCCTCTCTCCCCCCTTTTTGGGTT
TATTTTTTATGGGGGGGGGGGTTTTTTTTTTTTAAACCCCTTTTTTGTCCGGCCCGGGGA
TTTTCCCCCCCCCCCCCTTCCCGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
23-169, BP168160 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP168160.1|), blast E-value=0, identity=99.32% |
|
23-169, BP438311 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438311.1|), blast E-value=0, identity=99.32% |
|
23-169, BP447448 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP447448.1|), blast E-value=0, identity=99.32% |
|
24-169, BW976487 full-length enriched swine cDNA library, adult intestine
(dbj|BW976487.1|), blast E-value=0, identity=99.32% |
|
26-169, CJ000588 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ000588.1|), blast E-value=0, identity=99.31% |
|
23-169, CJ022186 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ022186.1|), blast E-value=0, identity=99.32% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
23-169, BP168160 full-length enriched swine cDNA library, adult thymus Sus
(dbj|BP168160.1|), blast E-value=0, identity=99.32% |
|
23-169, BP438311 full-length enriched swine cDNA library, adult lung Sus
(dbj|BP438311.1|), blast E-value=0, identity=99.32% |
|
23-169, BP447448 full-length enriched swine cDNA library, adult liver Sus
(dbj|BP447448.1|), blast E-value=0, identity=99.32% |
|
24-169, BW976487 full-length enriched swine cDNA library, adult intestine
(dbj|BW976487.1|), blast E-value=0, identity=99.32% |
|
26-169, CJ000588 full-length enriched swine cDNA library, adult liver Sus
(dbj|CJ000588.1|), blast E-value=0, identity=99.31% |
|
23-169, CJ022186 full-length enriched swine cDNA library, adult spleen Sus
(dbj|CJ022186.1|), blast E-value=0, identity=99.32% |
Human gene identifier and UTR site,
human gene reading direction
|
23-190, gnl|bosTau2|chr16 (40740874-40740703) |
|
23-190, gnl|canFam2|chr2 (86726533-86726172) |
|
23-190, gnl|dasNov1|scaffold_57764 (7023-7351) |
|
23-190, gnl|echTel1|scaffold_321580 (382486-382802) |
|
23-190, gnl|galGal2|chr21 (5013169-5012915) |
|
23-190, gnl|hg17|chr1 (12611682-12611988) |
|
23-190, gnl|Hg17|chr1 (12611954-12611783) |
|
23-190, gnl|loxAfr1|scaffold_5797 (12693-12984) |
|
23-190, gnl|mm7|chr4 (144305871-144305534) |
|
23-190, gnl|Mm7|chr4 (144305566-144305758) |
|
23-190, gnl|monDom2|scaffold_114 (2823377-2823075) |
|
23-190, gnl|oryCun1|scaffold_213772 (1664-1313) |
|
23-190, gnl|panTro1|chr1_random (10081434-10081731) |
|
23-190, gnl|rheMac2|chr1 (15741356-15741655) |
|
23-190, gnl|rn3|chr5 (163352260-163351919) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
23-190, gnl|bosTau2|chr16 (40740874-40740703) |
|
23-190, gnl|canFam2|chr2 (86726533-86726172) |
|
23-190, gnl|dasNov1|scaffold_57764 (7023-7351) |
|
23-190, gnl|echTel1|scaffold_321580 (382486-382802) |
|
23-190, gnl|galGal2|chr21 (5013169-5012915) |
|
23-190, gnl|hg17|chr1 (12611682-12611988) |
|
23-190, gnl|Hg17|chr1 (12611954-12611783) |
|
23-190, gnl|loxAfr1|scaffold_5797 (12693-12984) |
|
23-190, gnl|mm7|chr4 (144305871-144305534) |
|
23-190, gnl|Mm7|chr4 (144305566-144305758) |
|
23-190, gnl|monDom2|scaffold_114 (2823377-2823075) |
|
23-190, gnl|oryCun1|scaffold_213772 (1664-1313) |
|
23-190, gnl|panTro1|chr1_random (10081434-10081731) |
|
23-190, gnl|rheMac2|chr1 (15741356-15741655) |
|
23-190, gnl|rn3|chr5 (163352260-163351919) |
