Non-Coding RNA Search

Ss1.1-Pig1-49B11.5

Sequence:


               
               TTTTGTGGCTGGAGAGGCAGGCTCGACGGTGTGTCCACAGCATTGGACCATGCCAGGCAC
AAAACGCTTTCAACATGTGATTGAGACCCCGGAGCCTGGCAAGTGGGAGTTGTCCGGGTA
TGAGGCAGCCCTGCCAATCACGGAGAAGTCAAACCCACTGACCCAGGACCTGGACAAAGC
AGATGCCAAGGAGATTGTTCGATTGCTGGGGCAGTGTGATGCTGAGATCTTCCAGGAGGA
GGGGCAAGTCATGCCCACATACCAGCGACTCTACAGTGAGTCCACTCTGACCACCATGGT
ACAAGTGGCTGGAAAAGTTCAGGAAGTGCTGAAGGAGCCTGAAGGGGGGCTGGTGGTGCT
GAGTGGAGGGGGCACCTCTGGCAGGATGGCATTCCTCATGTCGGTCTCCTTTAACCAGCT
GATGAGAGGTCTAGGACAGAAACCTCTTTACACATACCTCATTGCAGGAGGAGACAGGTC
TGTGGTGGCCTCTAGGGAGGGGACAGAAGATAGTGCCCTGCACGGGATTGAGGAGCTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTGTGGCTGGAGAGGCAGGCTCGACGGTGTGTCCACAGCATTGGACCATGCCAGGCAC
AAAACGCTTTCAACATGTGATTGAGACCCCGGAGCCTGGCAAGTGGGAGTTGTCCGGGTA
TGAGGCAGCCCTGCCAATCACGGAGAAGTCAAACCCACTGACCCAGGACCTGGACAAAGC
AGATGCCAAGGAGATTGTTCGATTGCTGGGGCAGTGTGATGCTGAGATCTTCCAGGAGGA
GGGGCAAGTCATGCCCACATACCAGCGACTCTACAGTGAGTCCACTCTGACCACCATGGT
ACAAGTGGCTGGAAAAGTTCAGGAAGTGCTGAAGGAGCCTGAAGGGGGGCTGGTGGTGCT
GAGTGGAGGGGGCACCTCTGGCAGGATGGCATTCCTCATGTCGGTCTCCTTTAACCAGCT
GATGAGAGGTCTAGGACAGAAACCTCTTTACACATACCTCATTGCAGGAGGAGACAGGTC
TGTGGTGGCCTCTAGGGAGGGGACAGAAGATAGTGCCCTGCACGGGATTGAGGAGCTGAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|5764044|emb|CAA70779.2|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5764044|emb|CAA70779.2|

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               1-112, gnl|bosTau2|chr11 (52982594-52982483)
               

               
               1-112, gnl|canFam2|chr17 (24413994-24414076)
               

               
               1-112, gnl|hg17|chr2 (27631343-27631443)
               

               
               1-112, gnl|Hg17|chr2 (27631373-27631485)
               

               
               1-112, gnl|loxAfr1|scaffold_91665 (3882-3781)
               

               
               1-112, gnl|mm7|chr5 (30330057-30330156)
               

               
               1-112, gnl|Mm7|chr5 (30330087-30330198)
               

               
               1-112, gnl|monDom2|scaffold_1 (148698769-148698663)
               

               
               1-112, gnl|oryCun1|scaffold_202677 (45095-44997)
               

               
               1-112, gnl|panTro1|chr12 (28575006-28575106)
               

               
               1-112, gnl|rheMac2|chr13 (27491304-27491404)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-112, gnl|bosTau2|chr11 (52982594-52982483)
               

               
               1-112, gnl|canFam2|chr17 (24413994-24414076)
               

               
               1-112, gnl|hg17|chr2 (27631343-27631443)
               

               
               1-112, gnl|Hg17|chr2 (27631373-27631485)
               

               
               1-112, gnl|loxAfr1|scaffold_91665 (3882-3781)
               

               
               1-112, gnl|mm7|chr5 (30330057-30330156)
               

               
               1-112, gnl|Mm7|chr5 (30330087-30330198)
               

               
               1-112, gnl|monDom2|scaffold_1 (148698769-148698663)
               

               
               1-112, gnl|oryCun1|scaffold_202677 (45095-44997)
               

               
               1-112, gnl|panTro1|chr12 (28575006-28575106)
               

               
               1-112, gnl|rheMac2|chr13 (27491304-27491404)

	1-112, gnl\|bosTau2\|chr11 (52982594-52982483)
	1-112, gnl\|canFam2\|chr17 (24413994-24414076)
	1-112, gnl\|hg17\|chr2 (27631343-27631443)
	1-112, gnl\|Hg17\|chr2 (27631373-27631485)
	1-112, gnl\|loxAfr1\|scaffold_91665 (3882-3781)
	1-112, gnl\|mm7\|chr5 (30330057-30330156)
	1-112, gnl\|Mm7\|chr5 (30330087-30330198)
	1-112, gnl\|monDom2\|scaffold_1 (148698769-148698663)
	1-112, gnl\|oryCun1\|scaffold_202677 (45095-44997)
	1-112, gnl\|panTro1\|chr12 (28575006-28575106)
	1-112, gnl\|rheMac2\|chr13 (27491304-27491404)