Non-Coding RNA Search

Ss1.1-Pig1-49O12.5

Sequence:


               
               GACTATGGATACCTGGAGGGCCACACTCCTGGCCCAGCCAGGCTGAGCCTTCTGTCCTCT
GCCTCTGGGGCCTGGGACCAACTCCCCCTTCTCCTTCCTCTTGGATGGCACCCCCACCCG
AGAGTCTGGACACCTGGGTTCTGCACTGTGGCTGGCTCAAGGAGCCATCTGGTGACAGCC
TCTGGCTGAGCATGGCCCTTTCAGCCCTGGGCCTGGACTCCTGGAGCCTCCTGGGCCTTT
TCCTCTTCCAGCTGCTCCTGCTGCTGTTGCCGCCGACAACCACGGGGGGTGACAGGCAGG
GGCCCACACCCAGGGTCCAGTACCATGCAGGGGACGGACGCAGAGTTCTTAGCCTCTTCC
ACCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCTTGAGTGGTGACGGAGGCACTCTCT
ATGTGGGGGCTCGTGAGGCCATTCTGGCCTTGAATATCCAGGATCCAGGGGTACCAAGGC
TGAAGAACATGATCCCCTGGCCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GACTATGGATACCTGGAGGGCCACACTCCTGGCCCAGCCAGGCTGAGCCTTCTGTCCTCT
GCCTCTGGGGCCTGGGACCAACTCCCCCTTCTCCTTCCTCTTGGATGGCACCCCCACCCG
AGAGTCTGGACACCTGGGTTCTGCACTGTGGCTGGCTCAAGGAGCCATCTGGTGACAGCC
TCTGGCTGAGCATGGCCCTTTCAGCCCTGGGCCTGGACTCCTGGAGCCTCCTGGGCCTTT
TCCTCTTCCAGCTGCTCCTGCTGCTGTTGCCGCCGACAACCACGGGGGGTGACAGGCAGG
GGCCCACACCCAGGGTCCAGTACCATGCAGGGGACGGACGCAGAGTTCTTAGCCTCTTCC
ACCAGAAGGGCCTCCAGGATTTTGACACTCTGCTCTTGAGTGGTGACGGAGGCACTCTCT
ATGTGGGGGCTCGTGAGGCCATTCTGGCCTTGAATATCCAGGATCCAGGGGTACCAAGGC
TGAAGAACATGATCCCCTGGCCAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61877755|ref|XP_614325.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61877755|ref|XP_614325.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               2-160, - strand, RNAz p=0.926311
               

               
               367-486, + strand, RNAz p=0.755025

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-160, - strand, RNAz p=0.926311
               

               
               367-486, + strand, RNAz p=0.755025

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC020974, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC020974, +

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               2-160, gnl|bosTau2|chr3 (10474428-10474275)
               

               
               2-160, gnl|canFam2|chr7 (44660177-44659829)
               

               
               2-160, gnl|hg17|chr1 (152936290-152936660)
               

               
               2-160, gnl|Hg17|chr1 (152936464-152936617)
               

               
               2-160, gnl|mm7|chr3 (88569675-88569294)
               

               
               2-160, gnl|Mm7|chr3 (88569487-88569351)
               

               
               2-160, gnl|monDom2|scaffold_59 (1388984-1388537)
               

               
               2-160, gnl|oryCun1|scaffold_203225 (45879-45496)
               

               
               2-160, gnl|panTro1|chr1 (134887725-134888095)
               

               
               2-160, gnl|rheMac2|chr1 (134755835-134756206)
               

               
               2-160, gnl|rn3|chr2 (180520650-180520275)
               


               
               328-491, gnl|bosTau2|chr3 (10471586-10471423)
               

               
               328-491, gnl|Hg17|chr1 (152939275-152939438)
               

               
               328-491, gnl|Mm7|chr3 (88566935-88566772)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-160, gnl|bosTau2|chr3 (10474428-10474275)
               

               
               2-160, gnl|canFam2|chr7 (44660177-44659829)
               

               
               2-160, gnl|hg17|chr1 (152936290-152936660)
               

               
               2-160, gnl|Hg17|chr1 (152936464-152936617)
               

               
               2-160, gnl|mm7|chr3 (88569675-88569294)
               

               
               2-160, gnl|Mm7|chr3 (88569487-88569351)
               

               
               2-160, gnl|monDom2|scaffold_59 (1388984-1388537)
               

               
               2-160, gnl|oryCun1|scaffold_203225 (45879-45496)
               

               
               2-160, gnl|panTro1|chr1 (134887725-134888095)
               

               
               2-160, gnl|rheMac2|chr1 (134755835-134756206)
               

               
               2-160, gnl|rn3|chr2 (180520650-180520275)
               


               
               328-491, gnl|bosTau2|chr3 (10471586-10471423)
               

               
               328-491, gnl|Hg17|chr1 (152939275-152939438)
               

               
               328-491, gnl|Mm7|chr3 (88566935-88566772)

	2-160, - strand, RNAz p=0.926311
	367-486, + strand, RNAz p=0.755025

	2-160, gnl\|bosTau2\|chr3 (10474428-10474275)
	2-160, gnl\|canFam2\|chr7 (44660177-44659829)
	2-160, gnl\|hg17\|chr1 (152936290-152936660)
	2-160, gnl\|Hg17\|chr1 (152936464-152936617)
	2-160, gnl\|mm7\|chr3 (88569675-88569294)
	2-160, gnl\|Mm7\|chr3 (88569487-88569351)
	2-160, gnl\|monDom2\|scaffold_59 (1388984-1388537)
	2-160, gnl\|oryCun1\|scaffold_203225 (45879-45496)
	2-160, gnl\|panTro1\|chr1 (134887725-134888095)
	2-160, gnl\|rheMac2\|chr1 (134755835-134756206)
	2-160, gnl\|rn3\|chr2 (180520650-180520275)

	328-491, gnl\|bosTau2\|chr3 (10471586-10471423)
	328-491, gnl\|Hg17\|chr1 (152939275-152939438)
	328-491, gnl\|Mm7\|chr3 (88566935-88566772)