Non-Coding RNA Search

Ss1.1-Pig1-4A21.5.5

Sequence:


               
               TCCAGTTTGTCGAGTCCGTGGATGACAAGACCTCCAGCTACTTCAGCATGGACTCTGCGG
ACAGCAAGAGGTCCCCCTACGCCGGGCTCCAGCTGGGGGCCAAGAAACCGTCTGTCACCT
TCGCCGAGAAGGGGGAGCCGCGCAGGTCCATCTTCTCGGAGCCCCGCAAGCCCACCGTGT
CCATCATGGAGCCCGGGGAGGTCCGGCGGAACAGCTACCCTCGGGCCGACTCGGGCATCC
TCCTGCGCTCCAAGTCGGGCTCCGAGGAGGTCCTGTGCGACTCGTGCATCGGCAACAAGC
AGAAGGCCGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCACCTCAAGC
CCCACCTGGAGGGCGCCGCCTTCCGCGACCACCAGCTGCTCGAGCCCATCCGGGACTTCG
AGGCCCGCAAGTGCCCCCTGCACGGCAAGACCATGGAGCTCTTCTGCCAGACGGACCAGA
CCTGCATCTGCTACCTCTGCATGTTCCAGGAGCACAAGAATCACAGCACTGTGACTGTGG
AAGAGGCCAAGGCCGAGAAGGAGACGGAGCTGTCACTGCAAAAGGAGCAGCTGCAGCTCA
AGATCATTGGGATCGAGGATGAAGCTGAGAAGTGGCAGAAGGAGAAGGACCGCATCAAGA
GCTTCACCACCAATGAGAAGGCCGTCCTGGAGCAGAATTTCCGAGACCTGGTGCGGGATC
TGGAGAAGCAAAAGGAGGAAGTGAGGGCTGCACTGGAGCAACGGGAGCAGGATGCCGTGG
ACCAAATAAAGGTGATCGTGGATGCTCTGGATGAGAGGGCCAAGGTGCTGCAGGAGGACA
AGCAGACCAGGGAGCAGCTGCATAGCATCAGCGACTCGGTGCTGTTTCTGCAGGAATTTG
GTGCCTTGATGAGCAGTTACTCCCTCCCCCCACCCCTGCCCACCTATCACGTGCTGCTGG
AGGGGGAGGGCCTGGGGCAGTCACTGGGCAACTTCAAGGACGACCTGCTCAATGTGTGCA
TGCTTCACGTTGAGAAGATGTGTAAGGCGGACCTCAGCCGTAACTTCATTGAGAGGAACC
ACATGGAGAATGGGGGTGACCATCGCTACCTGAACAACTATGGTAACAGCTATAATAGCG
AGTGGAGCGCTCCAGACGCCATGAAGAGATACTCCATGTACCTCACGCCCAAGGGTGGGG
CCAGGACATCGTACCAGCCGGCAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCAGTTTGTCGAGTCCGTGGATGACAAGACCTCCAGCTACTTCAGCATGGACTCTGCGG
ACAGCAAGAGGTCCCCCTACGCCGGGCTCCAGCTGGGGGCCAAGAAACCGTCTGTCACCT
TCGCCGAGAAGGGGGAGCCGCGCAGGTCCATCTTCTCGGAGCCCCGCAAGCCCACCGTGT
CCATCATGGAGCCCGGGGAGGTCCGGCGGAACAGCTACCCTCGGGCCGACTCGGGCATCC
TCCTGCGCTCCAAGTCGGGCTCCGAGGAGGTCCTGTGCGACTCGTGCATCGGCAACAAGC
AGAAGGCCGTCAAGTCCTGCCTGGTGTGCCAGGCCTCCTTCTGCGAGCTGCACCTCAAGC
CCCACCTGGAGGGCGCCGCCTTCCGCGACCACCAGCTGCTCGAGCCCATCCGGGACTTCG
AGGCCCGCAAGTGCCCCCTGCACGGCAAGACCATGGAGCTCTTCTGCCAGACGGACCAGA
CCTGCATCTGCTACCTCTGCATGTTCCAGGAGCACAAGAATCACAGCACTGTGACTGTGG
AAGAGGCCAAGGCCGAGAAGGAGACGGAGCTGTCACTGCAAAAGGAGCAGCTGCAGCTCA
AGATCATTGGGATCGAGGATGAAGCTGAGAAGTGGCAGAAGGAGAAGGACCGCATCAAGA
GCTTCACCACCAATGAGAAGGCCGTCCTGGAGCAGAATTTCCGAGACCTGGTGCGGGATC
TGGAGAAGCAAAAGGAGGAAGTGAGGGCTGCACTGGAGCAACGGGAGCAGGATGCCGTGG
ACCAAATAAAGGTGATCGTGGATGCTCTGGATGAGAGGGCCAAGGTGCTGCAGGAGGACA
AGCAGACCAGGGAGCAGCTGCATAGCATCAGCGACTCGGTGCTGTTTCTGCAGGAATTTG
GTGCCTTGATGAGCAGTTACTCCCTCCCCCCACCCCTGCCCACCTATCACGTGCTGCTGG
AGGGGGAGGGCCTGGGGCAGTCACTGGGCAACTTCAAGGACGACCTGCTCAATGTGTGCA
TGCTTCACGTTGAGAAGATGTGTAAGGCGGACCTCAGCCGTAACTTCATTGAGAGGAACC
ACATGGAGAATGGGGGTGACCATCGCTACCTGAACAACTATGGTAACAGCTATAATAGCG
AGTGGAGCGCTCCAGACGCCATGAAGAGATACTCCATGTACCTCACGCCCAAGGGTGGGG
CCAGGACATCGTACCAGCCGGCAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|17402907|ref|NP_478100.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17402907|ref|NP_478100.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               83-563, gnl|bosTau2|chr15 (15801254-15801734)
               

               
               83-563, gnl|Hg17|chr11 (119513573-119513146)
               

               
               83-563, gnl|Mm7|chr9 (43245597-43246025)
               


               
               892-1093, gnl|bosTau2|chr15 (15813682-15813883)
               

               
               892-1093, gnl|Hg17|chr11 (119501809-119501608)
               

               
               892-1093, gnl|Mm7|chr9 (43256517-43256718)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               83-563, gnl|bosTau2|chr15 (15801254-15801734)
               

               
               83-563, gnl|Hg17|chr11 (119513573-119513146)
               

               
               83-563, gnl|Mm7|chr9 (43245597-43246025)
               


               
               892-1093, gnl|bosTau2|chr15 (15813682-15813883)
               

               
               892-1093, gnl|Hg17|chr11 (119501809-119501608)
               

               
               892-1093, gnl|Mm7|chr9 (43256517-43256718)

	83-563, gnl\|bosTau2\|chr15 (15801254-15801734)
	83-563, gnl\|Hg17\|chr11 (119513573-119513146)
	83-563, gnl\|Mm7\|chr9 (43245597-43246025)

	892-1093, gnl\|bosTau2\|chr15 (15813682-15813883)
	892-1093, gnl\|Hg17\|chr11 (119501809-119501608)
	892-1093, gnl\|Mm7\|chr9 (43256517-43256718)