Non-Coding RNA Search

Ss1.1-Pig1-4B06.5

Sequence:


               
               GAACCTCCCTGTGCTGCAATGTCATCATCCCATTTAACAAATGAAACTCAGAGGAAGAAA
GTCTCTCATCCAGTGTCATACAGCTAGCCAGAGGCAGAGTTAAGGTCTGCAGCCAGCTCT
GTCTGGTCCCAGAAACTCTATTCTTTTATGGACAATATATGTACTTAGGACATTCTAGAC
TATCCTGGTAACCTACATTTATTTAGCACTTCTATGTTAAGCACTTTACATGTGTATTTC
ATTTATCCCTCACAGCAGCCCTGAGTTAGGTACAATTATCACTTCCCTTTTATGGATGAG
GTATATGGAACTCAGAGAGTTTAAGTAACTTGCCCAAGGGCACCCAGCTGGTCTCTGTTA
GAGTCTGAACTTGAACCTAGGTCTGTCTGGCTCCAGTAGGGCCACAGAGGCTTGGGGTTT
TGACCCTATCTATCTATCTTCTATCTATATCAGCAGGTTAATGTAAACATCTTAAAGGCA
GCTTTGCAAAGAGTTCTTAAAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAACCTCCCTGTGCTGCAATGTCATCATCCCATTTAACAAATGAAACTCAGAGGAAGAAA
GTCTCTCATCCAGTGTCATACAGCTAGCCAGAGGCAGAGTTAAGGTCTGCAGCCAGCTCT
GTCTGGTCCCAGAAACTCTATTCTTTTATGGACAATATATGTACTTAGGACATTCTAGAC
TATCCTGGTAACCTACATTTATTTAGCACTTCTATGTTAAGCACTTTACATGTGTATTTC
ATTTATCCCTCACAGCAGCCCTGAGTTAGGTACAATTATCACTTCCCTTTTATGGATGAG
GTATATGGAACTCAGAGAGTTTAAGTAACTTGCCCAAGGGCACCCAGCTGGTCTCTGTTA
GAGTCTGAACTTGAACCTAGGTCTGTCTGGCTCCAGTAGGGCCACAGAGGCTTGGGGTTT
TGACCCTATCTATCTATCTTCTATCTATATCAGCAGGTTAATGTAAACATCTTAAAGGCA
GCTTTGCAAAGAGTTCTTAAAAAT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               314-421, - strand, RNAz p=0.853601

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               314-421, - strand, RNAz p=0.853601

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               239-502, gnl|bosTau2|chr17 (40468080-40468351)
               

               
               239-502, gnl|Hg17|chr12 (107186665-107186384)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               239-502, gnl|bosTau2|chr17 (40468080-40468351)
               

               
               239-502, gnl|Hg17|chr12 (107186665-107186384)

	239-502, gnl\|bosTau2\|chr17 (40468080-40468351)
	239-502, gnl\|Hg17\|chr12 (107186665-107186384)